CellProfiling
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HPA-competition-solutions
HPA-competition-solutions PublicTeam original solutions for the Human Protein Atlas image classification competition
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SingleCellProteogenomics
SingleCellProteogenomics PublicCell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model
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HPA-competition
HPA-competition PublicHuman Protein Atlas image classification competition
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Repositories
- Sp8-Lif_To_Memento Public
FIJI plugin that reads .lif files from the Sp8 confocal microscope and outputs a file system with pngs for Memento.
- ell_code_template Public
- HPACellSegmentatorPortable Public
Just a rework of the HPA Cell Segmentator repository that works with modern and simple python libraries
- subcell-analysis Public
- SubCellPortable Public
This is a convenient code wrapper to run Lundberg lab SubCell model in inference with your own images
- HPA_Convert_Sp8_To_OMETIF Public
- HPA_Convert_OPERA_To_LIMS-OMETIF Public
An ImageJ plugin to convert Opera Phenix image output folders to OME Tif format suitable for the HPA LIMS system or for Memento.