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@CellProfiling

CellProfiling

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  1. HPA-Cell-Segmentation HPA-Cell-Segmentation Public

    Python 95 27

  2. HPA-competition-solutions HPA-competition-solutions Public

    Team original solutions for the Human Protein Atlas image classification competition

    Jupyter Notebook 60 21

  3. SingleCellProteogenomics SingleCellProteogenomics Public

    Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model

    Python 13 5

  4. HPA-competition HPA-competition Public

    Human Protein Atlas image classification competition

    Jupyter Notebook 13 3

  5. subcell-embed subcell-embed Public

    Codebase for training the SubCell models

    Python 12 3

  6. pipex pipex Public

    A pipeline to transform images into valuable analysis items

    Python 10 2

Repositories

Showing 10 of 58 repositories
  • cam_acq Public

    Python project to control microscope through client-server program.

    Python 5 Apache-2.0 0 1 0 Updated Apr 28, 2025
  • Sp8-Lif_To_Memento Public

    FIJI plugin that reads .lif files from the Sp8 confocal microscope and outputs a file system with pngs for Memento.

    Java 0 GPL-3.0 0 0 0 Updated Apr 26, 2025
  • Python 0 0 0 0 Updated Apr 24, 2025
  • HPACellSegmentatorPortable Public

    Just a rework of the HPA Cell Segmentator repository that works with modern and simple python libraries

    Python 0 0 0 0 Updated Apr 24, 2025
  • camacq-plugins Public

    Plugins for camacq

    Python 0 Apache-2.0 0 0 0 Updated Apr 24, 2025
  • Jupyter Notebook 3 MIT 0 0 0 Updated Apr 14, 2025
  • SubCellPortable Public

    This is a convenient code wrapper to run Lundberg lab SubCell model in inference with your own images

    Python 2 MIT 3 0 0 Updated Mar 13, 2025
  • pipex Public

    A pipeline to transform images into valuable analysis items

    Python 10 MIT 2 2 0 Updated Mar 10, 2025
  • Java 0 GPL-3.0 0 0 0 Updated Mar 7, 2025
  • HPA_Convert_OPERA_To_LIMS-OMETIF Public

    An ImageJ plugin to convert Opera Phenix image output folders to OME Tif format suitable for the HPA LIMS system or for Memento.

    Java 0 GPL-3.0 0 0 0 Updated Feb 28, 2025

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