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@HelmchenLabSoftware

Helmchen Lab

Lab of Fritjof Helmchen at the Brain Research Institute at the University of Zurich

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  1. Cascade Cascade Public

    Calibrated inference of spiking from calcium ΔF/F data using deep networks

    Jupyter Notebook 141 42

  2. Centripetal_propagation_astrocytes Centripetal_propagation_astrocytes Public

    Custom code (Python or Matlab) to compute centripetal propagation from astrocytic calcium recordings using pixel-wise correlation functions

    MATLAB 10

  3. OCIA OCIA Public

    Calcium Imaging Analysis pipeline with a flexible framework

    MATLAB 3 3

  4. CaImAn_DendriteAnalysis CaImAn_DendriteAnalysis Public

    Jupyter notebooks for analysis of dendritic two-photon calcium imaging data using the CaImAn toolbox.

    Jupyter Notebook 2 3

  5. td_dendrites td_dendrites Public

    Code to simulate the computational model for the manuscript 'Unsigned temporal difference errors in cortical apical dendrites during learning'

    Python 2

  6. CaImAn_LocomotionAnalysis CaImAn_LocomotionAnalysis Public

    Jupyter notebooks for analysis of Pia's two-photon calcium imaging data using the the CaImAn toolbox.

    Jupyter Notebook 1 1

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