added json output

dev_requirements/requirements-coverage.txt

@@ -1,8 +1,9 @@
+# SHA1:6dafbcf610e9f81897b65ee9142715ab2e793f9e
 #
-# This file is autogenerated by pip-compile with python 3.10
+# This file is autogenerated by pip-compile-multi
 # To update, run:
 #
-#    pip-compile requirements-coverage.in
+#    pip-compile-multi
 #
 coverage==7.4.3
-    # via -r dev_requirements/requirements-coverage.in
+    # via -r dev_requirements\requirements-coverage.in

dev_requirements/requirements-formatting.txt

@@ -1,24 +1,23 @@
+# SHA1:2c7ffcd29222de3114c7f7994911f1b69d06b6b3
 #
-# This file is autogenerated by pip-compile with python 3.10
+# This file is autogenerated by pip-compile-multi
 # To update, run:
 #
-#    pip-compile requirements-formatting.in
+#    pip-compile-multi
 #
 black==24.2.0
-    # via -r dev_requirements/requirements-formatting.in
-click==8.1.3
+    # via -r dev_requirements\requirements-formatting.in
+click==8.1.7
     # via black
+colorama==0.4.6
+    # via click
 isort==5.13.2
-    # via -r dev_requirements/requirements-formatting.in
+    # via -r dev_requirements\requirements-formatting.in
 mypy-extensions==1.0.0
     # via black
-packaging==23.0
+packaging==23.2
     # via black
-pathspec==0.11.0
+pathspec==0.12.1
     # via black
 platformdirs==4.2.0
     # via black
-tomli==2.0.1
-    # via black
-typing-extensions==4.10.0
-    # via black

dev_requirements/requirements-linting.txt

@@ -1,12 +1,15 @@
+# SHA1:0e15f8789b9d62fe90d1f1b0b6a7e32f13b99b19
 #
-# This file is autogenerated by pip-compile with python 3.10
+# This file is autogenerated by pip-compile-multi
 # To update, run:
 #
-#    pip-compile requirements-linting.in
+#    pip-compile-multi
 #
 astroid==3.1.0
     # via pylint
-dill==0.3.7
+colorama==0.4.6
+    # via pylint
+dill==0.3.8
     # via pylint
 isort==5.13.2
     # via pylint
@@ -15,10 +18,6 @@ mccabe==0.7.0
 platformdirs==4.2.0
     # via pylint
 pylint==3.1.0
-    # via -r dev_requirements/requirements-linting.in
-tomli==2.0.1
-    # via pylint
-tomlkit==0.11.6
+    # via -r dev_requirements\requirements-linting.in
+tomlkit==0.12.4
     # via pylint
-typing-extensions==4.10.0
-    # via astroid

dev_requirements/requirements-packaging.txt

@@ -1,56 +1,49 @@
+# SHA1:93e4fbf2b6cce1574fe3d5315360512fa9927699
 #
-# This file is autogenerated by pip-compile with python 3.10
+# This file is autogenerated by pip-compile-multi
 # To update, run:
 #
-#    pip-compile requirements-packaging.in
+#    pip-compile-multi
 #
-bleach==6.0.0
-    # via readme-renderer
 build==1.1.1
-    # via -r dev_requirements/requirements-packaging.in
-certifi==2023.7.22
+    # via -r dev_requirements\requirements-packaging.in
+certifi==2024.2.2
     # via requests
-cffi==1.15.1
-    # via cryptography
-charset-normalizer==3.1.0
+charset-normalizer==3.3.2
     # via requests
-cryptography==42.0.4
-    # via secretstorage
+colorama==0.4.6
+    # via build
 docutils==0.20.1
     # via readme-renderer
-idna==3.4
+idna==3.6
     # via requests
-importlib-metadata==6.7.0
-    # via
-    #   keyring
-    #   twine
-jaraco-classes==3.2.3
+importlib-metadata==7.0.1
+    # via twine
+jaraco-classes==3.3.1
     # via keyring
-jeepney==0.8.0
-    # via
-    #   keyring
-    #   secretstorage
-keyring==23.13.1
+keyring==24.3.1
     # via twine
 markdown-it-py==3.0.0
     # via rich
 mdurl==0.1.2
     # via markdown-it-py
-more-itertools==9.1.0
+more-itertools==10.2.0
     # via jaraco-classes
-packaging==23.1
+nh3==0.2.15
+    # via readme-renderer
+packaging==23.2
     # via build
-pkginfo==1.9.6
+pkginfo==1.10.0
     # via twine
-pycparser==2.21
-    # via cffi
-pygments==2.15.1
+pygments==2.17.2
     # via
     #   readme-renderer
     #   rich
 pyproject-hooks==1.0.0
     # via build
-readme-renderer==37.3
+pywin32-ctypes==0.2.2
+    # via keyring
+readme-renderer==43.0
     # via twine
 requests==2.31.0
     # via
@@ -60,23 +53,13 @@ requests-toolbelt==1.0.0
     # via twine
 rfc3986==2.0.0
     # via twine
-rich==13.4.2
+rich==13.7.1
     # via twine
-secretstorage==3.3.3
-    # via keyring
-six==1.16.0
-    # via bleach
-tomli==2.0.1
-    # via
-    #   build
-    #   pyproject-hooks
 twine==5.0.0
-    # via -r dev_requirements/requirements-packaging.in
-urllib3==2.0.7
+    # via -r dev_requirements\requirements-packaging.in
+urllib3==2.2.1
     # via
     #   requests
     #   twine
-webencodings==0.5.1
-    # via bleach
-zipp==3.15.0
+zipp==3.17.0
     # via importlib-metadata

dev_requirements/requirements-spell_check.txt

@@ -1,8 +1,9 @@
+# SHA1:a7062511e9640ed2a5c2dea1da5c8b5f59c0f0d7
 #
-# This file is autogenerated by pip-compile with Python 3.11
-# by the following command:
+# This file is autogenerated by pip-compile-multi
+# To update, run:
 #
-#    pip-compile requirements-spellcheck.in
+#    pip-compile-multi
 #
 codespell==2.2.6
-    # via -r dev_requirements/requirements-spell_check.in
+    # via -r dev_requirements\requirements-spell_check.in

dev_requirements/requirements-tests.txt

@@ -1,18 +1,17 @@
+# SHA1:0eaa389e1fdb3a1917c0f987514bd561be5718ee
 #
-# This file is autogenerated by pip-compile with python 3.10
+# This file is autogenerated by pip-compile-multi
 # To update, run:
 #
-#    pip-compile requirements-tests.in
+#    pip-compile-multi
 #
-exceptiongroup==1.1.3
+colorama==0.4.6
     # via pytest
 iniconfig==2.0.0
     # via pytest
-packaging==23.0
+packaging==23.2
     # via pytest
 pluggy==1.4.0
     # via pytest
-pytest==8.1.0
-    # via -r dev_requirements/requirements-tests.in
-tomli==2.0.1
-    # via pytest
+pytest==8.0.2
+    # via -r dev_requirements\requirements-tests.in

dev_requirements/requirements-type_check.txt

@@ -1,14 +1,13 @@
+# SHA1:7983aaa01d64547827c20395d77e248c41b2572f
 #
-# This file is autogenerated by pip-compile with python 3.10
+# This file is autogenerated by pip-compile-multi
 # To update, run:
 #
-#    pip-compile requirements-type_check.in
+#    pip-compile-multi
 #
 mypy==1.8.0
-    # via -r dev_requirements/requirements-type_check.in
+    # via -r dev_requirements\requirements-type_check.in
 mypy-extensions==1.0.0
     # via mypy
-tomli==2.0.1
-    # via mypy
 typing-extensions==4.10.0
     # via mypy

requirements.txt

@@ -6,7 +6,7 @@
 #
 annotated-types==0.6.0
     # via pydantic
-click==8.1.3
+click==8.1.7
     # via migmose (pyproject.toml)
 colorama==0.4.6
     # via

src/migmose/__main__.py

@@ -2,6 +2,7 @@
 contains CLI logic for migmose.
 """
 
+import json
 from pathlib import Path
 from typing import Generator, Union
 
@@ -79,7 +80,9 @@ def preliminary_output_as_json(table: list[str], message_type: str, output_dir:
     if not output_dir.exists():
         output_dir.mkdir(parents=True, exist_ok=True)
     file_path = output_dir.joinpath(f"{message_type}_preliminary_output.json")
-    file_path.write_text(str(table), encoding="utf-8")
+    structured_json = {line: None for line in table}
+    with open(file_path, "w") as json_file:
+        json.dump(structured_json, json_file, indent=4, encoding="utf-8")
     logger.info(f"Created and wrote to {file_path}")