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18 Open 19 Closed
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Issues list

Visium vs Visium alignment - LDDMM graphs not shown
#50 opened Apr 2, 2025 by vagm110901
Opt out polts and error in output
#48 opened Feb 24, 2025 by Albert-biorem
Errors in final cells of Xenium H&E Alignment tutorial: NameError for tpointsI and AttributeError for `.to_csv()
#47 opened Feb 19, 2025 by albert239825
Non-Reproducible Results in LDDMM While Aligning Xenium Datasets
#45 opened Feb 13, 2025 by qu-bit1
1
The mouse CCF version as the reference
#44 opened Feb 13, 2025 by SONGDONGYUAN1994
Parameters
#43 opened Feb 9, 2025 by DruncBread
GPU memory occupied after transformation
#42 opened Jan 18, 2025 by racng
Setting scale parameters
#41 opened Jan 16, 2025 by JRS92
2
Scaling fitted transform
#40 opened Jan 15, 2025 by racng
2
LDDMM error: IndexError: index 1 is out of bounds for dimension 0 with size 1
#39 opened Dec 9, 2024 by OMIC-coding
2
Using Multiple GPUs in build_transform
#38 opened Dec 6, 2024 by dyyjenny
How can I map my entire mouse brain MERFISH section to the Allen Brain Atlas and annotate the brain regions?
#37 opened Dec 2, 2024 by kulansam
6
[Question] Aligning two H&E images
#34 opened Sep 20, 2024 by melanieloth
Sagittal section registration to allen brain atlas
#33 opened Sep 11, 2024 by cobioda
1
Affine transform issue
#27 opened Jan 10, 2024 by ebolotin02
1
Align DAPI to blue channel of H&E
#25 opened Dec 21, 2023 by ViriatoII
registration using gene expression information
#20 opened Oct 19, 2023 by common-chenlab
5
How to choose parameters?
#19 opened Oct 19, 2023 by grst
3
ProTip! Exclude everything labeled bug with -label:bug.