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- meeting schedules
- DEIJAR --> JEDI
- elife lab culture doc
- etc
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jananiravi committed Jul 10, 2023
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2 changes: 1 addition & 1 deletion docs/index.html
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Expand Up @@ -172,7 +172,7 @@ <h1 class="unnumbered">About JRaviLab docs</h1>
<p>This is a short e-book compiled to guide, onboard, and offboard JRaviLab members at the University of Colorado Anschutz Medical Campus (and Michigan State University).</p>
<section id="acknowledgments" class="level3">
<h3 class="anchored" data-anchor-id="acknowledgments">Acknowledgments</h3>
<p>We appreciate and build upon awesome onboarding group resources from Arjun Krishnan, Fan Zhang, Casey Greene, Annika Barber, Christoph Rau, Jeff Leek, and several others.</p>
<p>We appreciate and build upon awesome onboarding resources from Arjun Krishnan, Fan Zhang, Casey Greene, Annika Barber, Christoph Rau, Jeff Leek, <a href="https://doi.org/10.7554/eLife.88853">elife</a>, and several others.</p>
<p>✍️ If you’d like to edit/update/contribute to this e-book (<em>built with <a href="https://quarto.org/docs/books">Quarto</a></em>), please <a href="mailto:janani.ravi@cuanschutz.edu">email me</a> or submit a pull request to the <a href="https://github.com/JRaviLab/lab_docs">GitHub repository</a> directly.</p>
</section>
<section id="how-to-reach-us" class="level3">
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69 changes: 30 additions & 39 deletions docs/meetings.html
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Expand Up @@ -135,12 +135,11 @@ <h2 id="toc-title">Table of contents</h2>
<li><a href="#format" id="toc-format" class="nav-link active" data-scroll-target="#format"><span class="toc-section-number">4.1</span> Format</a></li>
<li><a href="#logistics" id="toc-logistics" class="nav-link" data-scroll-target="#logistics"><span class="toc-section-number">4.2</span> Logistics</a>
<ul class="collapse">
<li><a href="#monthly-group-meetings" id="toc-monthly-group-meetings" class="nav-link" data-scroll-target="#monthly-group-meetings"><span class="toc-section-number">4.2.1</span> Monthly Group Meetings</a></li>
<li><a href="#co-work-sessions" id="toc-co-work-sessions" class="nav-link" data-scroll-target="#co-work-sessions"><span class="toc-section-number">4.2.2</span> Co-work Sessions 💻</a></li>
<li><a href="#monthly-group-socials" id="toc-monthly-group-socials" class="nav-link" data-scroll-target="#monthly-group-socials"><span class="toc-section-number">4.2.3</span> Monthly Group Socials ☕ 🍵 🥐</a></li>
<li><a href="#monthlyweekly-individual-check-ins" id="toc-monthlyweekly-individual-check-ins" class="nav-link" data-scroll-target="#monthlyweekly-individual-check-ins"><span class="toc-section-number">4.2.4</span> Monthly/Weekly individual check-ins:</a></li>
<li><a href="#project-meetings-15min-per-person" id="toc-project-meetings-15min-per-person" class="nav-link" data-scroll-target="#project-meetings-15min-per-person"><span class="toc-section-number">4.2.5</span> Project meetings (15min per person)</a></li>
<li><a href="#collaborations" id="toc-collaborations" class="nav-link" data-scroll-target="#collaborations"><span class="toc-section-number">4.2.6</span> Collaborations</a></li>
<li><a href="#weekly-group-meetings" id="toc-weekly-group-meetings" class="nav-link" data-scroll-target="#weekly-group-meetings"><span class="toc-section-number">4.2.1</span> Weekly Group Meetings</a></li>
<li><a href="#monthly-group-socials" id="toc-monthly-group-socials" class="nav-link" data-scroll-target="#monthly-group-socials"><span class="toc-section-number">4.2.2</span> Monthly Group Socials ☕ 🍵 🥐</a></li>
<li><a href="#monthlyweekly-individual-check-ins" id="toc-monthlyweekly-individual-check-ins" class="nav-link" data-scroll-target="#monthlyweekly-individual-check-ins"><span class="toc-section-number">4.2.3</span> Monthly/Weekly individual check-ins:</a></li>
<li><a href="#project-meetings-15min-per-person" id="toc-project-meetings-15min-per-person" class="nav-link" data-scroll-target="#project-meetings-15min-per-person"><span class="toc-section-number">4.2.4</span> Project meetings (~15min per person)</a></li>
<li><a href="#dbmi-seminar-schedule" id="toc-dbmi-seminar-schedule" class="nav-link" data-scroll-target="#dbmi-seminar-schedule"><span class="toc-section-number">4.2.5</span> DBMI seminar schedule</a></li>
</ul></li>
</ul>
</nav>
Expand All @@ -165,15 +164,15 @@ <h1 class="title d-none d-lg-block"><span class="chapter-number">4</span>&nbsp;

</header>

<p>Please update this semester’s meeting schedule <a href="https://github.com/JRaviLab/group/tree/master/meetings">here</a>.</p>
<p>Please update this semester’s meeting schedule <a href="https://docs.google.com/spreadsheets/d/14919WwHIiKFFBcYZgF9wxACIYqh-gW-2QeDyM4WU28E/edit#gid=0">here</a>.</p>
<section id="format" class="level2" data-number="4.1">
<h2 data-number="4.1" class="anchored" data-anchor-id="format"><span class="header-section-number">4.1</span> Format</h2>
<ul>
<li><p>Monthly group meetings, group socials, co-work sessions</p></li>
<li><p>Monthly bioinfo/programming primers (w/ <a href="https://cu-dbmi.github.io/set-website/about">DBMI SET</a>)</p></li>
<li><p>Weekly group meetings, group socials, co-work sessions</p></li>
<li><p>Weekly bioinfo/programming primers (w/ <a href="https://cu-dbmi.github.io/set-website/about">DBMI SET</a>)</p></li>
<li><p>Weekly project meetings</p></li>
<li><p>Biweekly software engg meetings</p></li>
<li><p>Biweekly/monthly collab meetings</p></li>
<li><p>Weekly software engg meetings</p></li>
<li><p>(Bi)weekly/monthly collab meetings</p></li>
</ul>
</section>
<section id="logistics" class="level2" data-number="4.2">
Expand All @@ -184,48 +183,40 @@ <h2 data-number="4.2" class="anchored" data-anchor-id="logistics"><span class="h
<li>Semester planning meeting (once per sem, during the first month)</li>
<li>Slack for everything else! 😃</li>
</ul>
<section id="monthly-group-meetings" class="level3" data-number="4.2.1">
<h3 data-number="4.2.1" class="anchored" data-anchor-id="monthly-group-meetings"><span class="header-section-number">4.2.1</span> Monthly Group Meetings</h3>
<p>Fri: 1p MST / 3p EST</p>
<section id="weekly-group-meetings" class="level3" data-number="4.2.1">
<h3 data-number="4.2.1" class="anchored" data-anchor-id="weekly-group-meetings"><span class="header-section-number">4.2.1</span> Weekly Group Meetings</h3>
<p>Thu: 10a MST / 12p EST</p>
<p>We usually go around the table and give quick 5min progress updates from the week before. Alternatively, we can schedule research updates/journal club presentations each month or host separate monthly journal clubs.</p>
<p><a href="https://github.com/JRaviLab/bioinfo-primers">Bioinfo primer series</a> <br> Mon: 11a–12p MST / 1–2p EST</p>
</section>
<section id="co-work-sessions" class="level3" data-number="4.2.2">
<h3 data-number="4.2.2" class="anchored" data-anchor-id="co-work-sessions"><span class="header-section-number">4.2.2</span> Co-work Sessions 💻</h3>
<p>For the whole group <br> Fri: 1-2p MST / 3-4p EST</p>
<p>Bioinfo primer series <br> Fri: 1–2.30p MST / 3–4.30p EST</p>
</section>
<section id="monthly-group-socials" class="level3" data-number="4.2.3">
<h3 data-number="4.2.3" class="anchored" data-anchor-id="monthly-group-socials"><span class="header-section-number">4.2.3</span> Monthly Group Socials ☕ 🍵 🥐</h3>
<p>Fri: 1p MST / 3p EST</p>
<section id="monthly-group-socials" class="level3" data-number="4.2.2">
<h3 data-number="4.2.2" class="anchored" data-anchor-id="monthly-group-socials"><span class="header-section-number">4.2.2</span> Monthly Group Socials ☕ 🍵 🥐</h3>
<p><tbd></tbd></p>
<ul>
<li>Random discussions/catch-up</li>
<li>Online games: https://jackbox.tv | https://drawbattle.io</li>
<li>Coffee/tea or ice cream for local folks</li>
<li>Once in a while, we can dedicate the group socials to fun topics close to your heart (e.g., music, sports, books, food, …)!</li>
</ul>
</section>
<section id="monthlyweekly-individual-check-ins" class="level3" data-number="4.2.4">
<h3 data-number="4.2.4" class="anchored" data-anchor-id="monthlyweekly-individual-check-ins"><span class="header-section-number">4.2.4</span> Monthly/Weekly individual check-ins:</h3>
<section id="monthlyweekly-individual-check-ins" class="level3" data-number="4.2.3">
<h3 data-number="4.2.3" class="anchored" data-anchor-id="monthlyweekly-individual-check-ins"><span class="header-section-number">4.2.3</span> Monthly/Weekly individual check-ins:</h3>
<p>Book via <a href="https://bit.ly/janani-cucal">Outlook bookings</a>.</p>
</section>
<section id="project-meetings-15min-per-person" class="level3" data-number="4.2.5">
<h3 data-number="4.2.5" class="anchored" data-anchor-id="project-meetings-15min-per-person"><span class="header-section-number">4.2.5</span> Project meetings (15min per person)</h3>
<section id="project-meetings-15min-per-person" class="level3" data-number="4.2.4">
<h3 data-number="4.2.4" class="anchored" data-anchor-id="project-meetings-15min-per-person"><span class="header-section-number">4.2.4</span> Project meetings (~15min per person)</h3>
<ul>
<li>Host response &amp; frugrep | Fri 2p MST (biw)</li>
<li>MolEvolvR/CompGenomics/AMR | Fri 11a MST (wk)</li>
<li>START | Fri 3p MST (mon)</li>
<li>Software engg | Wed 11a MST (biw)</li>
<li>Microbial G2P (MolEvolvR/CompGenomeR/AMR) | Tue 10a MST (wk)</li>
<li>Software engg (MolEvolvR, server, &amp; such) | Wed 9.15a MST (wk) | DBMI-SET (CU)</li>
<li>Host response and disease/drug gene expression | Wed, 10a MST / 12p EST (wk) | w/ KrishnanLab (CU)</li>
<li>EEPID | Wed, 11a (wk) | w/ WaleLab (MSU)</li>
<li>Legionella | Wed, 1p MST / 3p EST (mon) | w/ ShamesLab (MSU)</li>
<li>AMR omics | Wed, 3p MST (wk) | w/ ChatterjeeLab (UC Boulder) | <em>paused</em></li>
</ul>
</section>
<section id="collaborations" class="level3" data-number="4.2.6">
<h3 data-number="4.2.6" class="anchored" data-anchor-id="collaborations"><span class="header-section-number">4.2.6</span> Collaborations</h3>
<ul>
<li>Staphylococci | Wed, 1p MST / 3p EST (biw) | w/ HammerLab (MSU)</li>
<li>Disease gene expression | Mon, 11a MST / 1p EST (biw) | w/ KrishnanLab (CU)</li>
<li>Legionella | Wed, 1p MST / 3p EST (mon) | weekly from 2023 | w/ ShamesLab (MSU)</li>
<li>EEPID | TBD (biw) | w/ WaleLab (MSU)</li>
<li>AMR omics | Wed, 3p MST (wk) | w/ ChatterjeeLab (UC Boulder)</li>
</ul>
<section id="dbmi-seminar-schedule" class="level3" data-number="4.2.5">
<h3 data-number="4.2.5" class="anchored" data-anchor-id="dbmi-seminar-schedule"><span class="header-section-number">4.2.5</span> DBMI seminar schedule</h3>
<p>Posted by the <a href="https://github.com/jananiravi/dbmi_seminar">DBMI seminar committee</a></p>


</section>
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3 changes: 2 additions & 1 deletion docs/onboarding.html
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Expand Up @@ -175,6 +175,7 @@ <h1 data-number="2"><span class="header-section-number">2</span> Mission, Expect
<li><a href="https://jravilab.github.io/lab_docs/resources.html#health-and-wellness">Health, wellness</a>, safety</li>
<li>Diversity, accessibility</li>
</ul>
<p>We value believe in investing in and nurturing scientists as much as the science. We pride ourselves on providing a safe and inclusive space for people across intersectionalities. We are committed to mentoring (postdocs, students, programmers), education and outreach, and personalized professional development. We are passionate about finding ways to increase diversity and retention in STEM and quantitative sciences. If you share our passion, please <a href="//jravilab.github.io/joinus">reach out to us</a>!</p>
<p><em>Links and details to follow.</em></p>
</section>
<section id="lab-proceedings" class="level1" data-number="3">
Expand Down Expand Up @@ -211,7 +212,7 @@ <h1 data-number="5"><span class="header-section-number">5</span> GitHub</h1>
</section>
<section id="social-media" class="level1" data-number="6">
<h1 data-number="6"><span class="header-section-number">6</span> Social media</h1>
<p>If you have officially joined us as a grad or postdoc, or undergrad for 3/6+ months, you will automatically get added to our <a href="https://jravilab.github.io/#people">group webpage</a>. If not, please check a few sample pages and furnish me with those details – I can add you there right away. Also, we use Twitter for professional networking &amp; announcements (connecting with the broader scientific/R/technical communities). If you have a Twitter handle, share it with me (DM), or follow #auto-twitter for updates. You can check out/follow a few accounts maintained by us: <a href="https://twitter.com/jravilab">JRaviLab</a> | <a href="https://twitter.com/janani137">my handle</a> | <a href="https://twitter.com/rladies-eastlansing">RLadies-EastLansing</a> | <a href="https://twitter.com/womenplusdata">Women+ Data Science</a> | <a href="https://twitter.com/AsiaR-comm">AsiaR</a> | <a href="https://twitter.com/EvolComp">ISMB EvolCompGen COSI</a>. Thanks to recent <em>interesting</em> changes at Twitter, people have been migrating to Mastodon (e.g., <a href="https://genomic.social/explore">genomic.social</a>, <a href="https://fosstodon.org/explore">fosstodon</a>)!</p>
<p>If you have officially joined us as a grad or postdoc, or undergrad for 3/6+ months, you will automatically get added to our <a href="https://jravilab.github.io/#people">group webpage</a>. If not, please check a few sample pages and furnish me with those details – I can add you there right away. Also, we use Twitter for professional networking &amp; announcements (connecting with the broader scientific/R/technical communities). If you have a Twitter handle, share it with me (DM), or follow #auto-twitter for updates. You can check out/follow a few accounts maintained by us: <a href="https://twitter.com/jravilab">JRaviLab</a> | <a href="https://twitter.com/janani137">my handle</a> | <a href="https://twitter.com/rladies-aurora">RLadies-Aurora</a> | <a href="https://twitter.com/rladies-eastlansing">RLadies-EastLansing</a> | <a href="https://twitter.com/womenplusdata">Women+ Data Science</a> | <a href="https://twitter.com/AsiaR-comm">AsiaR</a> | <a href="https://twitter.com/EvolComp">ISMB EvolCompGen COSI</a>. Thanks to recent <em>interesting</em> changes at Twitter, people have been migrating to Mastodon (e.g., <a href="https://genomic.social/explore">genomic.social</a>, <a href="https://fosstodon.org/explore">fosstodon</a>)!</p>
<p>If you would like to co-maintain any of these accounts or our webpage, please DM me. I’m always looking for volunteers! :)</p>


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7 changes: 4 additions & 3 deletions docs/resources.html
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Expand Up @@ -143,7 +143,7 @@ <h2 id="toc-title">Table of contents</h2>
<ul class="collapse">
<li><a href="#health-and-wellness" id="toc-health-and-wellness" class="nav-link" data-scroll-target="#health-and-wellness"><span class="toc-section-number">3.2.1</span> Health and Wellness</a></li>
<li><a href="#women-in-stem" id="toc-women-in-stem" class="nav-link" data-scroll-target="#women-in-stem"><span class="toc-section-number">3.2.2</span> Women in STEM</a></li>
<li><a href="#deijar" id="toc-deijar" class="nav-link" data-scroll-target="#deijar"><span class="toc-section-number">3.2.3</span> DEIJAR</a></li>
<li><a href="#jedi" id="toc-jedi" class="nav-link" data-scroll-target="#jedi"><span class="toc-section-number">3.2.3</span> JEDI ⚔️</a></li>
<li><a href="#writing-center-at-cu-anschutz" id="toc-writing-center-at-cu-anschutz" class="nav-link" data-scroll-target="#writing-center-at-cu-anschutz"><span class="toc-section-number">3.2.4</span> Writing Center at CU Anschutz</a></li>
</ul></li>
</ul>
Expand Down Expand Up @@ -227,8 +227,9 @@ <h3 data-number="3.2.1" class="anchored" data-anchor-id="health-and-wellness"><s
<section id="women-in-stem" class="level3" data-number="3.2.2">
<h3 data-number="3.2.2" class="anchored" data-anchor-id="women-in-stem"><span class="header-section-number">3.2.2</span> <a href="https://www.cuanschutz.edu/services/women-in-stem/resources">Women in STEM</a></h3>
</section>
<section id="deijar" class="level3" data-number="3.2.3">
<h3 data-number="3.2.3" class="anchored" data-anchor-id="deijar"><span class="header-section-number">3.2.3</span> DEIJAR</h3>
<section id="jedi" class="level3" data-number="3.2.3">
<h3 data-number="3.2.3" class="anchored" data-anchor-id="jedi"><span class="header-section-number">3.2.3</span> JEDI ⚔️</h3>
<p><em>Justice, Equity, Diversity, and Inclusion</em></p>
<ul>
<li><a href="https://www.cuanschutz.edu/offices/diversity-equity-inclusion-community">Central Office of Diversity, Equity, Inclusion, and Community Engagement</a></li>
<li><a href="https://www.cuanschutz.edu/offices/office-of-disability-access-and-inclusion/home-page">Office of Disability, Access, and Inclusion</a></li>
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