update lab_docs

- added appendices
  - write a paper
  - make a poster
  - code review
  - source code/data best practices
  - career/prof dev
  - remote work
- edited main yaml, culture.qmd, and such
- added a dark theme

README.md

@@ -3,7 +3,8 @@
 This is a short e-book compiled to guide, onboard, and offboard JRaviLab members at the University of Colorado Anschutz Medical Campus (and Michigan State University).
 
 ### Sections
-⤵️ [Onboarding](https://jravilab.github.io/lab_docs/onboarding.html) | 💻 [How to X](https://jravilab.github.io/lab_docs/howto.html) | 💰 [Resources](https://jravilab.github.io/lab_docs/resources.html) | 🤝 [Meetings](https://jravilab.github.io/lab_docs/meetings.html) | ⤴️ [Offboarding](https://jravilab.github.io/lab_docs/offboarding.html) 
+
+⤵️ [Onboarding](https://jravilab.github.io/lab_docs/onboarding.html) \|🌞 [Culture](https://jravilab.github.io/lab_docs/culture.html) \| 💻 [How to X](https://jravilab.github.io/lab_docs/howto.html) \| 💰 [Resources](https://jravilab.github.io/lab_docs/resources.html) \| 🤝 [Meetings](https://jravilab.github.io/lab_docs/meetings.html) \| ⤴️ [Offboarding](https://jravilab.github.io/lab_docs/offboarding.html)
 
 ### Acknowledgments
 
@@ -12,4 +13,5 @@ We appreciate and build upon awesome onboarding resources from Arjun Krishnan, F
 ✍️ If you'd like to edit/update/contribute to this e-book (*built with [Quarto](https://quarto.org/docs/books)*), please [email me](mailto:janani.ravi@cuanschutz.edu) or submit a pull request to the [GitHub repository](https://github.com/JRaviLab/lab_docs) directly.
 
 ### How to reach us
-[Webpage](https://jravilab.github.io) | [PI](https://jravilab.github.io/#about) | [Twitter](https://twitter.com/jravilab) | [Mastodon](https://genomic.social/@jravilab) | [Email](mailto:janani.ravi@cuanschutz.edu)
+
+[Webpage](https://jravilab.github.io) \| [PI](https://jravilab.github.io/#about) \| [Twitter](https://twitter.com/jravilab) \| [Mastodon](https://genomic.social/@jravilab) \| [Email](mailto:janani.ravi@cuanschutz.edu)

_quarto.yml

@@ -1,26 +1,47 @@
 project:
   type: book
   #type: website
-  output-dir: docs
+  output-dir: docs/
 
 book:
   title: "JRaviLab docs"
   subtitle: "For members of the JRaviLab: past, present, and future!"
-  author: "Janani Ravi"
-  #date: `r date()`
+  author:
+  - name: "Janani Ravi & members of JRaviLab"
+    email: janani.ravi@cuanschutz.edu
+  reader-mode: true
+  date: "last-modified"
+
+  repo-url: https://github.com/jravilab/lab_docs
+  repo-branch: main
+  repo-actions: [edit, issue]
+
   chapters:
     - index.qmd
     - onboarding.qmd
+    - culture.qmd
     - howto.qmd
     - resources.qmd
-    - meetings.qmd
     - offboarding.qmd
+  appendices:
+    - meetings.qmd
+    - howto_code_review.qmd
+    - howto_write_sourcecode.qmd
+    - howto_work_remotely.qmd
+    - howto_make_poster.qmd
+    - howto_write_paper.qmd
+    - career-dev.qmd
 
 bibliography: references.bib
 
 format:
   html:
-    theme: cosmo
+    theme:
+      light: cosmo
+      dark: [cosmo, theme-dark.scss]
+      # light: flatly
+      # dark: darkly
+    code-link: true
   pdf:
     documentclass: scrreprt
 

career-dev.qmd

@@ -0,0 +1,30 @@
+# Career/Professional Development
+
+### Define and Measure Immediate, Tangible Growth Opportunities
+
+## Writing
+
+-   [ ] Update CV & submit it for feedback
+-   [ ] Perform and submit a self-evaluation: strengths, weakness, and career goals (w/ timeline)?
+-   [ ] Create a blog or submit a blog post about your project or lab experience to be posted on the lab's blog
+-   [ ] Read and review an article and post your comments on PubPeer or bioRxiv
+
+## Presenting
+
+-   [ ] Prepare for an elevator pitch
+-   [ ] Volunteer to give a talk (campus event, seminar, or elsewhere for outreach)
+-   [ ] Sign-up for mentoring and outreach
+
+## Networking
+
+-   [ ] Join Mastodon/BlueSky/Twitter and post a message
+-   [ ] Make a simple website (or LinkedIn profile) promoting yourself and your science/technology
+-   [ ] Initiate contact with a scientist/professional outside the lab/institution (whom you don't know before) -- get career advice, scientific advice, or a letter
+
+## Other
+
+-   [ ] Join a professional society
+
+### Credits
+
+Avasthi and Krishnan labs.