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[ENH] Add PyMOL plugin for pyKVFinder #132

Merged
merged 30 commits into from
Sep 25, 2024
Merged

[ENH] Add PyMOL plugin for pyKVFinder #132

merged 30 commits into from
Sep 25, 2024

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jvsguerra
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Major changes:

  • Redesign pyKVFinder documentation
  • Develop PyMOL plugin for pyKVFinder
  • Add documentation (installation and tutorial) for PyMOL plugin
  • Remove Python 3.9 from workflows and builds

@jvsguerra
Add template for pymol plugin
d8ccee6
@jvsguerra
Fix typo
94f8fac
@jvsguerra
Update plugin template code
bbfe095
@jvsguerra
Add a plugin that run and loads results - no bindings for visualizati…
ccbeff0 
…on and buttons yet
@jvsguerra
Add first visualization
14f7c97
@jvsguerra
Add cavity visualization to volume and area
d9e5cf1
@jvsguerra
Add placeholders for other visualizations
65d7b93
@jvsguerra
Add vdw to surface, add button for modelling surface, and add ignore …
442f8b3 
…backbone checkbutton
@jvsguerra
Update bindings for results tab
2808fa8
@jvsguerra
Binding Browse buttons
1185187
@jvsguerra
Add _restore_results function
caabdc1
@jvsguerra
Add ignore_backbone parameter
08ed31f
@jvsguerra
Handle vdW surface in GUI
eebffba
@jvsguerra
Add box adjustment mode to plugin
f98471c
@jvsguerra
Add a installation guide template
0aac11e
@jvsguerra
Update Help tab
f24b1bc
@jvsguerra
Change directory name for the plugin
4d8772b
@jvsguerra
Apply black formatting to python files
a5ff297
@jvsguerra
Update installation procedure
3052d7b
@jvsguerra
Update dependencies
ea343ee
@jvsguerra
Merge remote-tracking branch 'upstream/master' into pymol
979152c
@jvsguerra
Start reestructuring pyKVFinder documentation
50eda6a
@jvsguerra
Update INSTALLATION.md
ba4d27b
@jvsguerra
Update documentation to include plugins
0e63422
@jvsguerra
Update docstring
b7ce3d6
@jvsguerra
Remove Python 3.9 (preparation for numpy 2.1.x) and update package ve…
a241488 
…rsion
@jvsguerra
Update README.md
f3ca7a4
@jvsguerra jvsguerra added the enhancement New feature or request label Sep 24, 2024
@jvsguerra jvsguerra added this to the v0.7.0 milestone Sep 24, 2024
@jvsguerra jvsguerra self-assigned this Sep 24, 2024
@jvsguerra jvsguerra added the documentation Improvements or additions to documentation label Sep 24, 2024
@jvsguerra jvsguerra changed the title Add PyMOL plugin for pyKVFinder [ENH]: Add PyMOL plugin for pyKVFinder Sep 24, 2024
@jvsguerra jvsguerra changed the title [ENH]: Add PyMOL plugin for pyKVFinder [ENH] Add PyMOL plugin for pyKVFinder Sep 24, 2024
@jvsguerra jvsguerra merged commit 3554df1 into LBC-LNBio:master Sep 25, 2024
6 checks passed
@jvsguerra jvsguerra deleted the pymol branch September 25, 2024 14:32
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