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Update dataset_format.md #2722

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16 changes: 8 additions & 8 deletions documentation/dataset_format.md
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Expand Up @@ -169,18 +169,18 @@ fields since version 1!
Here is what the dataset.json should look like at the example of the Dataset005_Prostate from the MSD:

{
"channel_names": { # formerly modalities
"0": "T2",
"channel_names": {
"0": "T2",
"1": "ADC"
},
"labels": { # THIS IS DIFFERENT NOW!
},
"labels": {
"background": 0,
"PZ": 1,
"TZ": 2
},
"numTraining": 32,
"file_ending": ".nii.gz"
"overwrite_image_reader_writer": "SimpleITKIO" # optional! If not provided nnU-Net will automatically determine the ReaderWriter
},
"numTraining": 32,
"file_ending": ".nii.gz",
"overwrite_image_reader_writer": "SimpleITKIO"
}

The channel_names determine the normalization used by nnU-Net. If a channel is marked as 'CT', then a global
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