MAT-6547: initial pass at HQMF generator code from the MAT

madie-checkstyle.xml

@@ -12,7 +12,7 @@
 
     <!-- https://checkstyle.sourceforge.io/config_sizes.html#FileLength -->
     <module name="FileLength">
-        <property name="max" value="605" />
+        <property name="max" value="1000" />
     </module>
 <module name="SuppressionFilter">
   <property name="file" value="suppressions.xml"/>

pom.xml

@@ -27,7 +27,6 @@
     <mvnreports.version>3.2.2</mvnreports.version>
     <mvnsite.version>3.11.0</mvnsite.version>
     <okta.springboot.starter.version>3.0.5</okta.springboot.starter.version>
-
     <org.mapstruct.version>1.5.5.Final</org.mapstruct.version>
     <puppycrawl.checkstyle.version>10.1</puppycrawl.checkstyle.version>
     <spotify.fmt.version>2.21.1</spotify.fmt.version>
@@ -75,7 +74,17 @@
       <artifactId>packaging-utility</artifactId>
       <version>0.2.2</version>
     </dependency>
+    <dependency>
+      <groupId>org.apache.commons</groupId>
+      <artifactId>commons-lang3</artifactId>
+      <version>3.14.0</version>
+    </dependency>
 
+    <dependency>
+      <groupId>net.sf.saxon</groupId>
+      <artifactId>Saxon-HE</artifactId>
+      <version>12.4</version>
+    </dependency>
     <dependency>
       <groupId>org.codehaus.mojo</groupId>
       <artifactId>jaxb2-maven-plugin</artifactId>
@@ -87,6 +96,7 @@
       <artifactId>mapstruct</artifactId>
       <version>${org.mapstruct.version}</version>
     </dependency>
+
     <dependency>
       <groupId>org.springframework.boot</groupId>
       <artifactId>spring-boot-starter-test</artifactId>
@@ -97,7 +107,6 @@
       <artifactId>spring-security-test</artifactId>
       <scope>test</scope>
     </dependency>
-
   </dependencies>
   <repositories>
     <repository>
@@ -233,9 +242,11 @@
           <targetJdk>${java.version}</targetJdk>
           <excludes>
             <exclude>**/generated/**/*</exclude>
+            <exclude>**/madie/hqmf/**/*</exclude>
           </excludes>
           <excludeRoots>
             <excludeRoot>${project.basedir}/src/main/java/generated</excludeRoot>
+            <excludeRoot>${project.basedir}/src/main/java/gov/cms/madie/hqmf</excludeRoot>
           </excludeRoots>
         </configuration>
         <executions>

src/main/java/generated/gov/cms/madie/simplexml/ClauseType.java

@@ -6,16 +6,13 @@
 
 package generated.gov.cms.madie.simplexml;
 
-import java.io.Serializable;
 import java.util.ArrayList;
 import java.util.List;
-import jakarta.xml.bind.JAXBElement;
 import jakarta.xml.bind.annotation.XmlAccessType;
 import jakarta.xml.bind.annotation.XmlAccessorType;
 import jakarta.xml.bind.annotation.XmlAttribute;
-import jakarta.xml.bind.annotation.XmlElementRef;
-import jakarta.xml.bind.annotation.XmlElementRefs;
-import jakarta.xml.bind.annotation.XmlMixed;
+import jakarta.xml.bind.annotation.XmlElement;
+import jakarta.xml.bind.annotation.XmlElements;
 import jakarta.xml.bind.annotation.XmlType;
 
 /**
@@ -27,9 +24,11 @@
  * <complexType name="clauseType">
  *   <complexContent>
  *     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- *       <sequence>
- *         <element name="cqldefinition" type="{}cqldefinitionType" minOccurs="0"/>
- *         <element name="cqlaggfunction" type="{}cqlaggfunctionType" minOccurs="0"/>
+ *       <sequence maxOccurs="unbounded" minOccurs="0">
+ *         <choice>
+ *           <element name="cqldefinition" type="{}cqldefinitionType" minOccurs="0"/>
+ *           <element name="cqlaggfunction" type="{}cqlaggfunctionType" minOccurs="0"/>
+ *         </choice>
  *       </sequence>
  *       <attribute name="displayName" type="{http://www.w3.org/2001/XMLSchema}string" />
  *       <attribute name="isInGrouping" type="{http://www.w3.org/2001/XMLSchema}string" />
@@ -43,15 +42,14 @@
 @XmlAccessorType(XmlAccessType.FIELD)
 @XmlType(
     name = "clauseType",
-    propOrder = {"content"})
+    propOrder = {"cqldefinitionOrCqlaggfunction"})
 public class ClauseType {
 
-  @XmlElementRefs({
-    @XmlElementRef(name = "cqldefinition", type = JAXBElement.class, required = false),
-    @XmlElementRef(name = "cqlaggfunction", type = JAXBElement.class, required = false)
+  @XmlElements({
+    @XmlElement(name = "cqldefinition", type = CqldefinitionType.class),
+    @XmlElement(name = "cqlaggfunction", type = CqlaggfunctionType.class)
   })
-  @XmlMixed
-  protected List<Serializable> content;
+  protected List<Object> cqldefinitionOrCqlaggfunction;
 
   @XmlAttribute(name = "displayName")
   protected String displayName;
@@ -66,29 +64,28 @@ public class ClauseType {
   protected String uuid;
 
   /**
-   * Gets the value of the content property.
+   * Gets the value of the cqldefinitionOrCqlaggfunction property.
    *
    * <p>This accessor method returns a reference to the live list, not a snapshot. Therefore any
    * modification you make to the returned list will be present inside the JAXB object. This is why
-   * there is not a <CODE>set</CODE> method for the content property.
+   * there is not a <CODE>set</CODE> method for the cqldefinitionOrCqlaggfunction property.
    *
    * <p>For example, to add a new item, do as follows:
    *
    * <pre>
-   * getContent().add(newItem);
+   * getCqldefinitionOrCqlaggfunction().add(newItem);
    * </pre>
    *
-   * <p>Objects of the following type(s) are allowed in the list {@link JAXBElement }{@code <}{@link
-   * CqlaggfunctionType }{@code >} {@link JAXBElement }{@code <}{@link CqldefinitionType }{@code >}
-   * {@link String }
+   * <p>Objects of the following type(s) are allowed in the list {@link CqlaggfunctionType } {@link
+   * CqldefinitionType }
    *
-   * @return The value of the content property.
+   * @return The value of the cqldefinitionOrCqlaggfunction property.
    */
-  public List<Serializable> getContent() {
-    if (content == null) {
-      content = new ArrayList<>();
+  public List<Object> getCqldefinitionOrCqlaggfunction() {
+    if (cqldefinitionOrCqlaggfunction == null) {
+      cqldefinitionOrCqlaggfunction = new ArrayList<>();
     }
-    return this.content;
+    return this.cqldefinitionOrCqlaggfunction;
   }
 
   /**

src/main/java/generated/gov/cms/madie/simplexml/ObjectFactory.java

@@ -24,8 +24,6 @@
 public class ObjectFactory {
 
   private static final QName _Measure_QNAME = new QName("", "measure");
-  private static final QName _ClauseTypeCqldefinition_QNAME = new QName("", "cqldefinition");
-  private static final QName _ClauseTypeCqlaggfunction_QNAME = new QName("", "cqlaggfunction");
 
   /**
    * Create a new ObjectFactory that can be used to create new instances of schema derived classes
@@ -430,28 +428,4 @@ public MeasureDetailsType createMeasureDetailsType() {
   public JAXBElement<MeasureType> createMeasure(MeasureType value) {
     return new JAXBElement<>(_Measure_QNAME, MeasureType.class, null, value);
   }
-
-  /**
-   * Create an instance of {@link JAXBElement }{@code <}{@link CqldefinitionType }{@code >}
-   *
-   * @param value Java instance representing xml element's value.
-   * @return the new instance of {@link JAXBElement }{@code <}{@link CqldefinitionType }{@code >}
-   */
-  @XmlElementDecl(namespace = "", name = "cqldefinition", scope = ClauseType.class)
-  public JAXBElement<CqldefinitionType> createClauseTypeCqldefinition(CqldefinitionType value) {
-    return new JAXBElement<>(
-        _ClauseTypeCqldefinition_QNAME, CqldefinitionType.class, ClauseType.class, value);
-  }
-
-  /**
-   * Create an instance of {@link JAXBElement }{@code <}{@link CqlaggfunctionType }{@code >}
-   *
-   * @param value Java instance representing xml element's value.
-   * @return the new instance of {@link JAXBElement }{@code <}{@link CqlaggfunctionType }{@code >}
-   */
-  @XmlElementDecl(namespace = "", name = "cqlaggfunction", scope = ClauseType.class)
-  public JAXBElement<CqlaggfunctionType> createClauseTypeCqlaggfunction(CqlaggfunctionType value) {
-    return new JAXBElement<>(
-        _ClauseTypeCqlaggfunction_QNAME, CqlaggfunctionType.class, ClauseType.class, value);
-  }
 }

src/main/java/gov/cms/madie/hqmf/ConstantMessages.java

@@ -0,0 +1,174 @@
+package gov.cms.madie.hqmf;
+
+/** The Class ConstantMessages. */
+public interface ConstantMessages {
+
+  String CONTINUOUS_VARIABLE_SCORING = "Continuous Variable";
+
+  String PROPORTION_SCORING = "Proportion";
+
+  String RATIO_SCORING = "Ratio";
+
+  String COHORT_SCORING = "Cohort";
+
+  String POPULATION_CONTEXT_ID = "initialPopulation";
+
+  String NUMERATOR_CONTEXT_ID = "numerator";
+
+  String NUMERATOR_EXCLUSIONS_CONTEXT_ID = "numeratorExclusions";
+
+  String DENOMINATOR_CONTEXT_ID = "denominator";
+
+  String DENOMINATOR_EXCLUSIONS_CONTEXT_ID = "denominatorExclusions";
+
+  String DENOMINATOR_EXCEPTIONS_CONTEXT_ID = "denominatorExceptions";
+
+  String MEASURE_POPULATION_CONTEXT_ID = "measurePopulation";
+
+  String MEASURE_OBSERVATION_CONTEXT_ID = "measureObservation";
+
+  String USER_DEFINED_CONTEXT_DESC = "User-defined";
+
+  String POP_TAB = "Pop";
+
+  String POP_TAB_EXPANDED = "Population";
+
+  String NUM_TAB = "Num";
+
+  String NUM_TAB_EXPANDED = "Numerator";
+
+  String NUM_EX_TAB = "N Excl";
+
+  String NUM_EX_TAB_EXPANDED = "Numerator Exclusions";
+
+  String DEN_TAB = "Den";
+
+  String DEN_TAB_EXPANDED = "Denominator";
+
+  String EXCL_TAB = "D Excl";
+
+  String EXCL_TAB_EXPANDED = "Denominator Exclusions";
+
+  String EXCEP_TAB = "D Excep";
+
+  String EXCEP_TAB_EXPANDED = "Denominator Exceptions";
+
+  String MEASURE_POP_TAB = "Meas Pop";
+
+  String MEASURE_POP_TAB_EXPANDED = "Measure Population";
+
+  String MEASURE_OBS_TAB = "Meas Obs";
+
+  String MEASURE_OBS_TAB_EXPANDED = "Measure Observation";
+
+  String STRAT_TAB = "Strat";
+
+  String STRAT_TAB_EXPANDED = "Stratification";
+
+  String USER_DEFINED_TAB = "User-Defined";
+
+  String USER_DEFINED_TAB_EXPANDED = "User-Defined";
+
+  String MEASURE_PHRASE_TAB = "Measure Phrase";
+
+  String MEASURE_PHRASE_TAB_EXPANDED = "Measure Phrase";
+
+  String ATTRIBUTE = "Attribute";
+
+  String TIMING_ELEMENT = "Timing Element";
+
+  String PATIENT_CHARACTERISTIC_RACE = "Patient Characteristic Race";
+
+  String PATIENT_CHARACTERISTIC_ETHNICITY = "Patient Characteristic Ethnicity";
+
+  String PATIENT_CHARACTERISTIC_PAYER = "Patient Characteristic Payer";
+
+  String PATIENT_CHARACTERISTIC_GENDER = "Patient Characteristic Sex";
+
+  String GROUPING_CODE_SYSTEM = "Grouping";
+
+  String HL7_ADMINGENDER_CODE_SYSTEM = "Administrative Sex";
+
+  String CDC_CODE_SYSTEM = "CDC";
+
+  String SOURCE_OF_PAYMENT = "Source of Payment Typology";
+
+  String MAT_MODULE = "MAT";
+
+  String LOGIN_MODULE = "LOGIN";
+
+  String HARP_SUPPORT_MODULE = "HARP SUPPORT";
+
+  String PASSWORD = "password";
+
+  String PASSWORD_EXPIRE_DATE = "passwordExpireDate";
+
+  String LOGINID = "loginId";
+
+  String HARPID = "harpId";
+
+  String USER_EMAIL = "userEmail";
+
+  String URL = "url";
+
+  String INSERT = "Insert";
+
+  String UPDATE = "Update";
+
+  String DELETE = "Delete";
+
+  String USER_NOT_FOUND = "User Not Found";
+
+  String EMAIL_NOT_FOUND = "Email Not Found";
+
+  String TOOLTIP_FOR_OCCURRENCE =
+      "Select Specific Occurrence if you need to reference a specific occurrence of your element.";
+
+  String DEFAULT_SELECT = "--Select--";
+
+  String CREATE_NEW_MEASURE = "New Measure";
+
+  String CREATE_NEW_CQL = "New Library";
+
+  String MAXIMUM_ALLOWED_VERSION = "999.999";
+
+  String MAXIMUM_ALLOWED_MAJOR_VERSION = "999";
+
+  String MAXIMUM_ALLOWED_MINOR_VERSION = "999";
+
+  String GENDER_OID = "2.16.840.1.113762.1.4.1";
+
+  String RACE_OID = "2.16.840.1.114222.4.11.836";
+
+  String ETHNICITY_OID = "2.16.840.1.114222.4.11.837";
+
+  String PAYER_OID = "2.16.840.1.114222.4.11.3591";
+
+  String MAIN_TAB_LAYOUT_ID = "mainTab";
+
+  String MEASURE_COMPOSER_TAB = "measureTab";
+
+  String CQL_COMPOSER_TAB = "cqlTab";
+
+  String USER_DEFINED_QDM_OID = "1.1.1.1";
+
+  String USER_DEFINED_QDM_NAME = "User Defined QDM";
+
+  String PATIENT_CHARACTERISTIC_BIRTHDATE = "Patient Characteristic Birthdate";
+
+  String PATIENT_CHARACTERISTIC_EXPIRED = "Patient Characteristic Expired";
+
+  String DEAD = "Dead";
+
+  String BIRTHDATE = "Birthdate";
+
+  String DEAD_OID = "419099009";
+
+  String BIRTHDATE_OID = "21112-8";
+
+  String BIRTHDATE_CODE_SYSTEM_OID = "2.16.840.1.113883.6.1";
+
+  String DEAD_CODE_SYSTEM_OID = "2.16.840.1.113883.6.96";
+
+  String SUPPORT_EMAIL = "supportEmailAddress";
+}