Merge branch 'cleanup/gefs' of https://github.com/AntonMFernando-NOAA…

…/global-workflow into cleanup/gefs

env/AZUREPW.env

@@ -43,6 +43,13 @@ if [[ "${step}" = "fcst" ]] || [[ "${step}" = "efcs" ]]; then
     export APRUN_UFS="${launcher} -n ${ufs_ntasks}"
     unset nnodes ufs_ntasks
 
+elif [[ "${step}" = "waveinit" ]] || [[ "${step}" = "waveprep" ]] || [[ "${step}" = "wavepostsbs" ]] || [[ "${step}" = "wavepostbndpnt" ]] || [[ "${step}" = "wavepostbndpntbll" ]] || [[ "${step}" = "wavepostpnt" ]]; then
+
+    export CFP_MP="YES"
+    if [[ "${step}" = "waveprep" ]]; then export MP_PULSE=0 ; fi
+    export wavempexec=${launcher}
+    export wave_mpmd=${mpmd_opt}
+
 elif [[ "${step}" = "post" ]]; then
 
     export NTHREADS_NP=${NTHREADS1}
@@ -52,4 +59,45 @@ elif [[ "${step}" = "post" ]]; then
     [[ ${NTHREADS_DWN} -gt ${max_threads_per_task} ]] && export NTHREADS_DWN=${max_threads_per_task}
     export APRUN_DWN="${launcher} -n ${ntasks_dwn}"
 
+elif [[ "${step}" = "atmos_products" ]]; then
+
+    export USE_CFP="YES"  # Use MPMD for downstream product generation on Hera
+
+elif [[ "${step}" = "oceanice_products" ]]; then
+
+    export NTHREADS_OCNICEPOST=${NTHREADS1}
+    export APRUN_OCNICEPOST="${launcher} -n 1 --cpus-per-task=${NTHREADS_OCNICEPOST}"
+
+elif [[ "${step}" = "ecen" ]]; then
+
+    export NTHREADS_ECEN=${NTHREADSmax}
+    export APRUN_ECEN="${APRUN}"
+
+    export NTHREADS_CHGRES=${threads_per_task_chgres:-12}
+    [[ ${NTHREADS_CHGRES} -gt ${max_tasks_per_node} ]] && export NTHREADS_CHGRES=${max_tasks_per_node}
+    export APRUN_CHGRES="time"
+
+    export NTHREADS_CALCINC=${threads_per_task_calcinc:-1}
+    [[ ${NTHREADS_CALCINC} -gt ${max_threads_per_task} ]] && export NTHREADS_CALCINC=${max_threads_per_task}
+    export APRUN_CALCINC="${APRUN}"
+
+elif [[ "${step}" = "esfc" ]]; then
+
+    export NTHREADS_ESFC=${NTHREADSmax}
+    export APRUN_ESFC="${APRUN}"
+
+    export NTHREADS_CYCLE=${threads_per_task_cycle:-14}
+    [[ ${NTHREADS_CYCLE} -gt ${max_tasks_per_node} ]] && export NTHREADS_CYCLE=${max_tasks_per_node}
+    export APRUN_CYCLE="${APRUN}"
+
+elif [[ "${step}" = "epos" ]]; then
+
+    export NTHREADS_EPOS=${NTHREADSmax}
+    export APRUN_EPOS="${APRUN}"
+
+elif [[ "${step}" = "fit2obs" ]]; then
+
+    export NTHREADS_FIT2OBS=${NTHREADS1}
+    export MPIRUN="${APRUN}"
+
 fi

parm/config/gefs/config.base

@@ -342,7 +342,7 @@ export DELETE_COM_IN_ARCHIVE_JOB="YES"   # NO=retain ROTDIR.  YES default in arc
 export NUM_SND_COLLECTIVES=${NUM_SND_COLLECTIVES:-9}
 
 # The tracker, genesis, and METplus jobs are not supported on CSPs yet
-# TODO: we should place these in workflow/hosts/[csp]pw.yaml as part of AWS/AZURE/GOOGLE setup, not for general.
+# TODO: we should place these in workflow/hosts/[aws|azure|google]pw.yaml as part of CSP's setup, not for general.
 if [[ "${machine}" =~ "PW" ]]; then
    export DO_WAVE="NO"
 fi

parm/config/gefs/config.cleanup

@@ -17,14 +17,6 @@ if [[ "${DO_GEMPAK}" == "YES" ]]; then
     export RMOLDEND=222
 fi
 
-# Specify the list of files to exclude from the first stage of cleanup
-# Because arrays cannot be exported, list is a single string of comma-
-# separated values. This string is split to form an array at runtime.
-case ${RUN} in
-	gdas | gfs)	exclude_string="*prepbufr*, *cnvstat*, *atmanl.nc" ;;
-	enkf*)      exclude_string="*f006.ens*" ;;
-	*)			exclude_string="" ;;
-esac
-export exclude_string
+export exclude_string=""
 
 echo "END: config.cleanup"

parm/config/gefs/config.resources

@@ -43,6 +43,10 @@ case ${machine} in
     export PARTITION_BATCH="compute"
     max_tasks_per_node=36
     ;;
+  "AZUREPW")
+    export PARTITION_BATCH="compute"
+    max_tasks_per_node=24
+    ;;
   "GOOGLEPW")
     export PARTITION_BATCH="compute"
     max_tasks_per_node=32

parm/config/gefs/config.resources.AZUREPW

@@ -0,0 +1,11 @@
+#! /usr/bin/env bash
+
+# AZURE-specific job resources
+
+export is_exclusive="True"
+unset memory
+
+# shellcheck disable=SC2312
+for mem_var in $(env | grep '^memory_' | cut -d= -f1); do
+  unset "${mem_var}"
+done

workflow/hosts/azurepw.yaml

@@ -18,7 +18,7 @@ CHGRP_RSTPROD: 'YES'
 CHGRP_CMD: 'chgrp rstprod' # TODO: This is not yet supported.
 HPSSARCH: 'NO'
 HPSS_PROJECT: emc-global #TODO: See `ATARDIR` below.
-BASE_CPLIC: '/bucket/global-workflow-shared-data/ICSDIR/prototype_ICs'
+BASE_IC: '/bucket/global-workflow-shared-data/ICSDIR'
 LOCALARCH: 'NO'
 ATARDIR: '' # TODO: This will not yet work from AZURE.
 MAKE_NSSTBUFR: 'NO'