Support adding string type as value to neurodata object properties #322
GitHub Actions / JUnit Test Report
failed
Mar 3, 2025 in 0s
297 tests run, 295 passed, 0 skipped, 2 failed.
Annotations
Check failure on line 1 in NWBFileIOTest
github-actions / JUnit Test Report
NWBFileIOTest.testOutToPyNWB
Verification failed in tests.system.NWBFileIOTest/testOutToPyNWB.
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Raw output
Verification failed in tests.system.NWBFileIOTest/testOutToPyNWB.
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Test Diagnostic:
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/home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.py:200: FutureWarning: TimeSeries.__init__: Using positional arguments for this method is discouraged and will be deprecated in a future major release. Please use keyword arguments to ensure future compatibility.
ts = TimeSeries('test_timeseries', list(range(100, 200, 10)),
E
======================================================================
ERROR: testInFromMatNWB (PyNWBIOTest.NWBFileIOTest)
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Traceback (most recent call last):
File "/home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.py", line 23, in setUp
self.__container = self.addContainer(self.file)
File "/home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.py", line 204, in addContainer
mod.add_container(Clustering("A fake Clustering interface", [0, 1, 2, 0, 1, 2],
File "/opt/hostedtoolcache/Python/3.10.16/x64/lib/python3.10/site-packages/hdmf/utils.py", line 577, in func_call
return func(args[0], **pargs)
File "/opt/hostedtoolcache/Python/3.10.16/x64/lib/python3.10/site-packages/pynwb/ecephys.py", line 244, in __init__
self._error_on_new_pass_on_construct(
File "/opt/hostedtoolcache/Python/3.10.16/x64/lib/python3.10/site-packages/pynwb/core.py", line 65, in _error_on_new_pass_on_construct
raise ValueError(error_msg)
ValueError: The Clustering neurodata type is deprecated. Use pynwb.misc.Units or NWBFile.units instead
----------------------------------------------------------------------
Ran 1 test in 0.051s
FAILED (errors=1)
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Stack Information:
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In /home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.m (PyNWBIOTest.testOutToPyNWB) at 16
Check failure on line 1 in NWBFileIOTest
github-actions / JUnit Test Report
NWBFileIOTest.testInFromPyNWB
Assertion failed in tests.system.NWBFileIOTest/testInFromPyNWB and it did not run to completion.
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Raw output
Assertion failed in tests.system.NWBFileIOTest/testInFromPyNWB and it did not run to completion.
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Test Diagnostic:
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/home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.py:200: FutureWarning: TimeSeries.__init__: Using positional arguments for this method is discouraged and will be deprecated in a future major release. Please use keyword arguments to ensure future compatibility.
ts = TimeSeries('test_timeseries', list(range(100, 200, 10)),
E
======================================================================
ERROR: testOutToMatNWB (PyNWBIOTest.NWBFileIOTest)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.py", line 23, in setUp
self.__container = self.addContainer(self.file)
File "/home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.py", line 204, in addContainer
mod.add_container(Clustering("A fake Clustering interface", [0, 1, 2, 0, 1, 2],
File "/opt/hostedtoolcache/Python/3.10.16/x64/lib/python3.10/site-packages/hdmf/utils.py", line 577, in func_call
return func(args[0], **pargs)
File "/opt/hostedtoolcache/Python/3.10.16/x64/lib/python3.10/site-packages/pynwb/ecephys.py", line 244, in __init__
self._error_on_new_pass_on_construct(
File "/opt/hostedtoolcache/Python/3.10.16/x64/lib/python3.10/site-packages/pynwb/core.py", line 65, in _error_on_new_pass_on_construct
raise ValueError(error_msg)
ValueError: The Clustering neurodata type is deprecated. Use pynwb.misc.Units or NWBFile.units instead
----------------------------------------------------------------------
Ran 1 test in 0.049s
FAILED (errors=1)
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Stack Information:
------------------
In /home/runner/work/matnwb/matnwb/+tests/+system/PyNWBIOTest.m (PyNWBIOTest.testInFromPyNWB) at 23
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