0.3.1

What's Changed

🛠 Breaking Changes

• Remove --nuissance-regressors and --bandpass_filter by @tsalo in #658

🎉 Exciting New Features

• Add --dummy-scans parameter and deprecate --dummytime by @tsalo in #616
• Add --bids-filter-file parameter by @tsalo in #686
• Enable non-aggressive denoising with signal regressors by @tsalo in #697
• Improve identification of FreeSurfer derivatives by @tsalo in #719
• Collect preprocessed surfaces in new function by @tsalo in #731

🐛 Bug Fixes

• Remove dummy volumes from custom confounds files by @tsalo in #660
• Remove dummy volumes from beginning of each run in concatenation workflow by @tsalo in #661
• Retain noise components instead of dropping them in load_aroma by @tsalo in #670
• Use input_type to determine order of preferred spaces by @tsalo in #688
• Infer volumetric space from transform in executive summary with cifti data by @tsalo in #689
• Change input type from HPC to HCP by @kahinimehta in #691
• Replace failing non-aggressive AROMA denoising with working aggressive denoising by @tsalo in #693
• Select best volumetric space for transforms even when using --cifti flag by @tsalo in #695
• Downcast >32-bit files to 32-bit by @tsalo in #666
• Use appropriate intent codes for cifti outputs by @tsalo in #690
• Only concatenate processed runs by @tsalo in #713
• Do not use downcasted files as name sources by @tsalo in #712
• Warp segmentation file to appropriate space for carpet plots by @tsalo in #727
• Use brain mask in NIFTI connectivity workflow by @tsalo in #733

Other Changes

• Consolidate confounds at beginning of denoising workflows by @tsalo in #664
• Remove unused outputnodes from nifti and cifti workflows by @tsalo in #667
• Move QC/censoring plots into new workflow by @tsalo in #668
• Testing affines don't change across XCP runs by @kahinimehta in #649
• Load confounds via Nilearn functionality by @kahinimehta in #675
• Update docs by @kahinimehta in #682
• Add masks to package data by @kahinimehta in #715
• Use ds001491 fMRIPrep derivatives for tests by @tsalo in #698
• Add tests for confound loading function by @tsalo in #730
• Refactor executive summary workflow by @tsalo in #721
• Track start of workflow with sentry by @tsalo in #732

Full Changelog: 0.3.0...0.3.1