This release marks the reinitialization and cleanup of the repository for the Microtubule Simulation project. The updates introduce refinements to code organization, enhanced documentation, and the incorporation of Fibonacci scaling into quantum coherence simulations.
What’s New
• Reinitialized Repository: A clean history to streamline collaboration and maintenance.
• New Features:
• Added fibonacci_simulation.py to simulate quantum coherence using Fibonacci scaling.
• Refactored and modularized code for clarity and reusability (fibonacci_simulation_refactored.py).
• Enhanced visualization with quantum_coherence_evolution.png showcasing time evolution.
• Updated Documentation:
• Detailed project structure in README.md for ease of use.
• Included usage instructions for running simulations and generating outputs.
• Bug Fixes:
• Addressed directory and file organization issues to align with Git best practices.
• Resolved conflicts with .gitignore and .DS_Store.
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How to Use:
Clone the Repository:
git clone https://github.com/TheonlyqueenAC/Microtubule_Simulation.git
cd Microtubule_Simulation -
Install Dependencies:
pip install -r requirements.txt -
Run the primary Simulation:
python fibonacci_simulation.py -
Generated outputs include:
• A visual plot: quantum_coherence_evolution.png
• Logs and intermediate files for further analysis.
Known Issues
• Ensure proper directory paths when running scripts locally.
• For best performance, use Python 3.9 or higher.
Acknowledgments
Special thanks to the AI and IDE tools that facilitated this release. We also extend our gratitude to pioneers in the field of quantum biology and Fibonacci scaling.