Merge pull request #1189 from kmfoley/5.5_docs

Final update to docs and scripts
USEPA · Oct 2, 2024 · 9963279 · 9963279
2 parents 7d289a7 + 22b2b0e
commit 9963279
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diff --git a/CCTM/scripts/bldit_cctm.csh b/CCTM/scripts/bldit_cctm.csh
@@ -1,13 +1,13 @@
 #!/bin/csh -f
 
-# ======================= CCTMv5.4.X Build Script ========================= 
-# Usage: bldit.cctm >&! bldit.cctm.log                                   
+# ======================= CCTMv5.5.X Build Script ========================= 
+# Usage: bldit_cctm.csh <compiler> >&! bldit.cctm.log                          
 # Requirements: I/O API & netCDF libraries, a Fortran compiler,               
 #               and MPI for multiprocessor computing                     
 #
 # To report problems or request help with this script/program:           
 #             http://www.cmascenter.org
-# ======================================================================= 
+# =========================================================================  
 
 #> Set Compiler Identity by User Input: Options -> intel | pgi | gcc
  if ( $#argv == 1 ) then
@@ -78,19 +78,19 @@ set make_options = "-j"                #> additional options for make command if
 #set ISAM_CCTM                         #> uncomment to compile CCTM with ISAM activated
                                        #>   comment out to use standard process
 
-#set DDM3D_CCTM                        #> uncomment to compile CCTM with DD3D activated
+#set DDM3D_CCTM                        #> uncomment to compile CCTM with DDM-3D activated
                                        #>   comment out to use standard process
 #> Two-way WRF-CMAQ 
 #set build_twoway                      #> uncomment to build WRF-CMAQ twoway; 
                                        #>   comment out for off-line chemistry 
 
 #> Working directory and Version IDs
  if ( $?ISAM_CCTM ) then
-     set VRSN  = v54_ISAM             #> model configuration ID for CMAQ_ISAM
+     set VRSN  = v55_ISAM             #> model configuration ID for CMAQ_ISAM
  else if ( $?DDM3D_CCTM ) then
-     set VRSN = v54_DDM3D             #> model configuration ID for CMAQ_DDM
+     set VRSN = v55_DDM3D             #> model configuration ID for CMAQ_DDM
  else
-     set VRSN = v54                   #> model configuration ID for CMAQ
+     set VRSN = v55                   #> model configuration ID for CMAQ
  endif
 
  set EXEC  = CCTM_${VRSN}.exe          #> executable name
@@ -252,6 +252,10 @@ set make_options = "-j"                #> additional options for make command if
     set cpp_depmod = '-Dm3dry_opt'
  else if ($DepMod == stage) then
     set cpp_depmod = '-Dstage_opt'
+    if ( $?DDM3D_CCTM ) then
+       echo "*** DDM3D is not compatible with the STAGE deposition model"
+       exit 1
+    endif
  endif
 
 #> Set variables needed for multiprocessor and serial builds
@@ -342,9 +346,9 @@ set make_options = "-j"                #> additional options for make command if
 #> Set and create the "BLD" directory for checking out and compiling 
 #> source code. Move current directory to that build directory.
  if ( $?Debug_CCTM ) then
-    set Bld = $CMAQ_HOME/CCTM/scripts/BLD_CCTM_${VRSN}_${compilerString}_debug
+     set Bld = $CMAQ_HOME/CCTM/scripts/BLD_CCTM_${VRSN}_${compilerString}_${Mechanism}_${DepMod}_debug
  else
-    set Bld = $CMAQ_HOME/CCTM/scripts/BLD_CCTM_${VRSN}_${compilerString}
+     set Bld = $CMAQ_HOME/CCTM/scripts/BLD_CCTM_${VRSN}_${compilerString}_${Mechanism}_${DepMod}
  endif
 
 
@@ -793,7 +797,7 @@ set Cfile = ${Bld}/${CFG}.bld      # Config Filename
 
     cd $CMAQ_HOME/CCTM/scripts
 
-    # Downlad WRF repository from GitHub and put CMAQv5.4 into it
+    # Downlad WRF repository from GitHub and put CMAQv5.5 into it
     set WRF_BLD = BLD_WRF${WRF_VRSN}_CCTM_${VRSN}_${compilerString}
     setenv wrf_path ${CMAQ_HOME}/CCTM/scripts/${WRF_BLD}
     setenv WRF_CMAQ 1

diff --git a/CCTM/scripts/bldit_mech.csh b/CCTM/scripts/bldit_mech.csh
@@ -1,6 +1,6 @@
 #!/bin/csh -f
 
-# ================ CCTMv5.4 Mechanism Build Script ==================== 
+# ================ CCTMv5.5 Mechanism Build Script ==================== 
 # Usage: bldit_mech.csh >&! bldit_mech.log                                   
 # Requirements: I/O API & netCDF libraries, a Fortran compiler,               
 #               and MPI for multiprocessor computing                     

diff --git a/CCTM/scripts/isam_control.2016_12SE1.txt b/CCTM/scripts/isam_control.2016_12SE1.txt
diff --git a/CCTM/scripts/isam_control.2018_12NE3.txt b/CCTM/scripts/isam_control.2018_12NE3.txt
@@ -1,12 +1,12 @@
 !!! CMAQ-ISAM tag definition control file
 !!!   (lines begining with !!! - three exclamation marks - are ignored by the text parser)!!!
 !!!
-!!!   Example file provided with CMAQ v5.4 release
+!!!   Example file provided with CMAQ v5.5 release
 !!!   14 September 2022: Sergey L. Napelenok
 !!!
 !!! The "TAG CLASSES" line defines the tag classes to track for the simulation. Species in NITRATE and VOC classes depend on the
 !!! the chemical mechanism used. The below definitions apply for the cb6r3_ae7_aq mechanism. These species will be tracked for
-!!! each user-defiend source.
+!!! each user-defined source.
 !!!   Choose any/all from the list:
 !!!   SULFATE   - ASO4, SO2, SULF, SULRXN
 !!!   NITRATE   - ANO3, HNO3, NO, NO2, NO3, HONO, N2O5, PNA, PAN, PANX, NTR1, NTR2, INTR, CLNO2, CLNO3