README

.gitignore

@@ -1,126 +1,44 @@
-## Core latex/pdflatex auxiliary files:
-*.aux
-*.lof
-*.log
-*.lot
-*.fls
-*.out
-*.toc
-
-## Intermediate documents:
-*.dvi
-*-converted-to.*
-# these rules might exclude image files for figures etc.
-# *.ps
-# *.eps
-# *.pdf
-
-## Bibliography auxiliary files (bibtex/biblatex/biber):
-*.bbl
-*.bcf
-*.blg
-*-blx.aux
-*-blx.bib
-*.brf
-*.run.xml
-
-## Build tool auxiliary files:
-*.fdb_latexmk
-*.synctex
-*.synctex.gz
-*.synctex.gz(busy)
-*.pdfsync
-
-## Auxiliary and intermediate files from other packages:
-
-# algorithms
-*.alg
-*.loa
-
-# achemso
-acs-*.bib
-
-# amsthm
-*.thm
-
+## XeLaTeX
+presentation/*.aux
+presentation/*.lof
+presentation/*.log
+presentation/*.lot
+presentation/*.fls
+presentation/*.out
+presentation/*.toc
+presentation/*~
+presentation/*.bak
+presentation/*.backup
+presentation/*.kilepr
+presentation/*.pdf
 # beamer
-*.nav
-*.snm
-*.vrb
-
-#(e)ledmac/(e)ledpar
-*.end
-*.[1-9]
-*.[1-9][0-9]
-*.[1-9][0-9][0-9]
-*.[1-9]R
-*.[1-9][0-9]R
-*.[1-9][0-9][0-9]R
-*.eledsec[1-9]
-*.eledsec[1-9]R
-*.eledsec[1-9][0-9]
-*.eledsec[1-9][0-9]R
-*.eledsec[1-9][0-9][0-9]
-*.eledsec[1-9][0-9][0-9]R
-
-# glossaries
-*.acn
-*.acr
-*.glg
-*.glo
-*.gls
-
-# gnuplottex
-*-gnuplottex-*
-
+presentation/*.nav
+presentation/*.snm
+presentation/*.vrb
 # hyperref
-*.brf
-
+presentation/*.brf
 # knitr
-*-concordance.tex
-*.tikz
-*-tikzDictionary
-
+presentation/*-concordance.tex
+presentation/*.tikz
+presentation/*-tikzDictionary
 # listings
-*.lol
-
+presentation/*.lol
 # makeidx
-*.idx
-*.ilg
-*.ind
-*.ist
-
+presentation/*.idx
+presentation/*.ilg
+presentation/*.ind
+presentation/*.ist
 # minitoc
-*.maf
-*.mtc
-*.mtc0
-
+presentation/*.maf
+presentation/*.mtc
+presentation/*.mtc0
 # minted
-_minted*
-*.pyg
-
-# morewrites
-*.mw
-
+presentation/_minted*
+presentation/*.pyg
 # nomencl
-*.nlo
-
-# sagetex
-*.sagetex.sage
-*.sagetex.py
-*.sagetex.scmd
-
-# sympy
-*.sout
-*.sympy
-sympy-plots-for-*.tex/
-
-# todonotes
-*.tdo
-
-# xindy
-*.xdy
-
-# WinEdt
+presentation/*.nlo
+## Other
+*~
 *.bak
-*.sav
+*.backup
+examples/*.RData.rkworkplace

LICENSE

@@ -1,12 +1,19 @@
+License for presentation Course of work with molecular data in R 2016 and 
+related example scripts.
+
+License pro přednášku Kurz práce s molekulárními daty v R 2016 a související 
+příklady.
+
 Cretive Commons Attribution-NonCommercial-ShareAlike 4.0 International
 
 CC BY-NC-SA 4.0
 
 ================================================================================
 
-English: creativecommons.org/licenses/by-nc-sa/4.0/deed.en
+English: https://creativecommons.org/licenses/by-nc-sa/4.0/deed.en
 
-Full text: creativecommons.org/licenses/by-nc-sa/4.0/legalcode and below.
+Full text: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode and 
+below.
 
 You are free to:
 * Share — copy and redistribute the material in any medium or format
@@ -33,7 +40,7 @@ privacy, or moral rights may limit how you use the material.
 
 ================================================================================
 
-Česky: creativecommons.org/licenses/by-nc-sa/4.0/deed.cs
+Česky: https://creativecommons.org/licenses/by-nc-sa/4.0/deed.cs
 
 Dílo smíte:
 * Sdílet — rozmnožovat a distribuovat materiál prostřednictvím jakéhokoli média 
@@ -130,8 +137,8 @@ b. Adapter's License means the license You apply to Your Copyright and Similar
    Rights in Your contributions to Adapted Material in accordance with the 
    terms and conditions of this Public License.
 c. BY-NC-SA Compatible License means a license listed at 
-   creativecommons.org/compatiblelicenses, approved by Creative Commons as 
-   essentially the equivalent of this Public License.
+   https://creativecommons.org/compatiblelicenses, approved by Creative 
+   Commons as essentially the equivalent of this Public License.
 d. Copyright and Similar Rights means copyright and/or similar rights closely 
    related to copyright including, without limitation, performance, broadcast, 
    sound recording, and Sui Generis Database Rights, without regard to how the 
@@ -371,12 +378,12 @@ the Creative Commons public licenses is dedicated to the public domain under
 the CC0 Public Domain Dedication. Except for the limited purpose of indicating 
 that material is shared under a Creative Commons public license or as otherwise 
 permitted by the Creative Commons policies published at 
-creativecommons.org/policies, Creative Commons does not authorize the use of 
-the trademark “Creative Commons” or any other trademark or logo of Creative 
-Commons without its prior written consent including, without limitation, in 
-connection with any unauthorized modifications to any of its public licenses 
-or any other arrangements, understandings, or agreements concerning use of 
-licensed material. For the avoidance of doubt, this paragraph does not form 
-part of the public licenses.
-
-Creative Commons may be contacted at creativecommons.org.
+https://creativecommons.org/policies, Creative Commons does not authorize the 
+use of the trademark “Creative Commons” or any other trademark or logo of 
+Creative Commons without its prior written consent including, without 
+limitation, in connection with any unauthorized modifications to any of its 
+public licenses or any other arrangements, understandings, or agreements 
+concerning use of licensed material. For the avoidance of doubt, this paragraph 
+does not form part of the public licenses.
+
+Creative Commons may be contacted at https://creativecommons.org/

README

@@ -1 +1,26 @@
-
+Kurz práce s molekulárními daty v R 2016
+
+R je v současnosti asi nejmocnější nástroj na statistické výpočty všeho druhu. 
+Je k dispozici i celá řada modulů pro práci s molekulárními daty. Ty budou 
+náplní kurzu. Předchozí znalost R je výhodou, nikoli však podmínkou. Bude-li 
+se kurzu účastnit alespoň jeden člověk nemluvící česky, kurz bude anglicky.
+
+Informace o kurzu: https://trapa.cz/cs/kurz-molekularni-data-r-2016
+Kurz ve studijním informačním systému: 
+https://is.cuni.cz/studium/predmety/index.php?do=predmet&kod=MB120C16
+Kontakt na autora: https://trapa.cz/cs/kontakt
+
+================================================================================
+
+Course of work with molecular data in R 2016
+
+R is nowadays probably the most powerful tool for statistics of all types. 
+There are plenty of modules available for work with molecular data. Those will 
+be introduced during the course. Previous knowledge of R is useful, but not 
+necessary. If there is at least one participant not speaking Czech, the course 
+will be in English.
+
+Information about the course: https://trapa.cz/en/course-molecular-data-r-2016
+Course in Study Information System:
+https://is.cuni.cz/studium/eng/predmety/index.php?do=predmet&kod=MB120C16
+Contact author: https://trapa.cz/en/contact