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Welcome to the SingleCellDataAnalysisResources wiki!

Resources to read:

Carpenteries:

https://dmgatti.github.io/SingleCellRNAseq/06-Biology-Driven-Analyses/index.html

10X genomics

• Sample prep for PBMC protocol in support : https://www.10xgenomics.com/support/single-cell-gene-expression/documentation/steps/sample-prep/fresh-frozen-human-peripheral-blood-mononuclear-cells-for-single-cell-rna-sequencing

JAX sc core;

https://jacksonlaboratory.sharepoint.com/sites/SingleCellBiology/SitePages/Overview-of-the-10X-Genomics-platform.aspx

Dave tang

https://davetang.org/muse/2018/08/09/getting-started-with-cell-ranger/

Video tutorials

https://www.youtube.com/watch?v=Eun2btNLyJc

https://www.youtube.com/watch?v=nS7c7TZEcrk

https://www.youtube.com/watch?v=k9VFNLLQP8c

Broad

https://broadinstitute.github.io/2019_scWorkshop/cite-seq-and-scatac-seq.html

https://broadinstitute.github.io/2020_scWorkshop/understanding-sequencing-raw-data.html#public-data-repositories

Others

https://bioinformatics.uconn.edu/single-cell-rna-sequencing-cell-ranger-2/#

https://biocellgen-public.svi.edu.au/mig_2019_scrnaseq-workshop/processing-raw-scrna-seq-data.html

https://bioconductor.org/packages/devel/bioc/vignettes/DropletUtils/inst/doc/DropletUtils.html#reading-in-10x-genomics-data

Docker:

https://hub.docker.com/r/nfcore/demultiplex