4.5.3

• Updated licensing policy
• Added option to supply external ignore depth file
• removed legacy code to run external commands
• Added prerelease.sh

Release 4.5.2

updated gitignore to allow test data

Hotfix Release 4.5.1

updated test input files, removed internal dependency

Release 4.5.0

added base qulaity and mapping quality filters

Hotfix Release 4.4.2

Exonerate --percent threshold reduced to 90 from 95 to allow 4 mismatches

BugFix Release 4.4.0

• added additional condition to check mismatch at the variant region in the alignment
• reads mapping on alternate refrence sequence with mismatch at variant region are now categorised into UNK [ unknown ] reads
• Modified option to correctly read file when bed only option selected

Hotfix release 4.3.6

Creates augmented vcf file even if no records were augmented; corrected processlog in header

Hotfix release 4.3.5

updated test with new options

Hotfix Release 4.3.4

updated condition to handle missing vcf file for a sample

Hotfix Release 4.3.3

corrected tabix syntax as per Bio::DB::HTS::Tabix, added test for high depth region overlap