Merge pull request #23 from dbmi-bgm/upgrade-python-20230920

Upgrade Python 3.11

.github/workflows/main-publish.yml

@@ -0,0 +1,36 @@
+# PyPi publish for magma
+
+name: publish
+
+# Controls when the action will run.
+on:
+
+  # Publish on all tags
+  push:
+    tags:
+    - '*'
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+# A workflow run is made up of one or more jobs that can run sequentially or in parallel
+jobs:
+  # This workflow contains a single job called "build"
+  build:
+    # The type of runner that the job will run on
+    runs-on: ubuntu-22.04
+
+    # Steps represent a sequence of tasks that will be executed as part of the job
+    steps:
+      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+      - uses: actions/checkout@v2
+      - uses: actions/setup-python@v2
+        with:
+          python-version: 3.11
+      - name: Publish
+        env:
+          PYPI_USER: ${{ secrets.PYPI_USER }}
+          PYPI_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
+        run: | 
+          make configure
+          make publish-for-ga

.github/workflows/main.yml

@@ -20,10 +20,10 @@ jobs:
     name: Test magma with Python ${{ matrix.python_version }}
 
     # The type of runner that the job will run on
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-22.04
     strategy:
       matrix:
-        python_version: [3.7, 3.8]
+        python_version: ['3.8', '3.9', '3.10', '3.11']
 
     # Steps represent a sequence of tasks that will be executed as part of the job
     steps:

CHANGELOG.rst

@@ -0,0 +1,10 @@
+
+==========
+Change Log
+==========
+
+
+2.0.0
+=====
+* Added this CHANGELOG.rst file.
+* Upgrade to Python 3.11.

Makefile

@@ -5,6 +5,7 @@ configure:
 	pip install poetry
 
 build:
+	make configure
 	poetry install
 
 update:
@@ -19,6 +20,16 @@ help:
 clean:
 	rm -rf *.egg-info
 
+publish:
+	poetry run publish-to-pypi
+
+publish-for-ga:
+	# Need this poetry install first for some reason in GitHub Actions, otherwise getting this:
+	# Warning: 'publish-to-pypi' is an entry point defined in pyproject.toml, but it's not installed as a script. You may get improper `sys.argv[0]`.
+	# Only a warning, but then it does not find dcicutils for some reason.
+	poetry install
+	poetry run publish-to-pypi --noconfirm
+
 info:
 	@: $(info Here are some 'make' options:)
 	   $(info - Use 'make configure' to configure the repo by installing poetry.)