initial commit

.github/workflows/build-latex-diff.yml

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+name: Build LaTeX diff document
+on:
+  push:
+    branches:
+      - master
+      - main
+  pull_request:
+    types: [opened, synchronize, reopened]
+
+jobs:
+  build_latex:
+    runs-on: ubuntu-latest
+    env:
+      PAPER: ${{ github.event.repository.name }}
+      MAIN: ${{ github.event.pull_request.base.sha }}
+    steps:
+      - name: Set up Git repository
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+      - name: Compile LaTeX diff
+        uses: xu-cheng/latex-action@v3
+        with:
+          root_file: |
+            ${{ env.PAPER }}-diff${{ env.MAIN }}.tex
+          working_directory: .
+          extra_system_packages: "git patch"
+          latexmk_shell_escape: true
+          pre_compile: git config --global --add safe.directory /github/workspace && latexdiff-vc --git --flatten --disable-auto-mbox --exclude-safecmd="Cref,Cref\*,hspace" -r ${{ env.MAIN }} ${{ env.PAPER }}.tex
+        env:
+          TEXINPUTS: ".:$PWD/../latex-styles-master/styles//:"
+          BSTINPUTS: ".:$PWD/../latex-styles-master/styles/common"
+          BIBINPUTS: ".:$PWD/../latex-styles-master/share"
+      - name: Upload PDF
+        uses: actions/upload-artifact@v2
+        with:
+          name: DiffPDF
+          path: |
+            ${{ env.PAPER }}-diff${{ env.MAIN }}.pdf

.github/workflows/build-latex.yml

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+name: Build LaTeX document
+on:
+  push:
+    branches:
+      - master
+      - main
+  pull_request:
+    types: [opened, synchronize, reopened]
+
+jobs:
+  build_latex:
+    runs-on: ubuntu-latest
+    env:
+      PAPER: ${{ github.event.repository.name }}
+    steps:
+      - name: Set up Git repository
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+      - name: Compile LaTeX document
+        uses: xu-cheng/latex-action@v3
+        with:
+          root_file: |
+            ${{ env.PAPER }}.tex
+          working_directory: .
+          extra_system_packages: "git patch"
+          latexmk_shell_escape: true
+          pre_compile: git config --global --add safe.directory /github/workspace
+        env:
+          TEXINPUTS: ".:$PWD/../latex-styles-master/styles//:"
+          BSTINPUTS: ".:$PWD/../latex-styles-master/styles/common"
+          BIBINPUTS: ".:$PWD/../latex-styles-master/share"
+      - name: Upload PDF
+        uses: actions/upload-artifact@v3
+        with:
+          name: PDF
+          path: |
+            ${{ env.PAPER }}.pdf

.github/workflows/latexindent.yml

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+name: latexindent
+
+on:
+  push:
+    branches:
+      - 'main'
+      - 'master'
+
+jobs:
+  build:
+    runs-on: macos-latest
+    steps:
+    - name: Checking out repository
+      uses: actions/checkout@v3
+    - name: Install latexindent
+      run: brew install latexindent
+    - name: Run latexindent
+      id: run-latexindent
+      run: |
+        shopt -s nullglob  # allow empty loops below
+        cd paper
+        for f in *.tex; do latexindent -l ./localSettings.yaml -m -r -w $f; done
+        for f in *.bib; do latexindent -l ./localSettings.yaml -m -r -w $f; done
+        rm *.bak[0-9]
+    - name: Create Pull Request
+      uses: peter-evans/create-pull-request@v4

.github/workflows/lint.yml

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+name: ChkTeX
+
+on:
+  pull_request:
+    branches:
+      - master
+      - main
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+    - name: Checking out repository
+      uses: actions/checkout@v4
+    - name: LaTeX linter (chktex)
+      uses: dpo/chktex-action@main
+      env:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+    - name: Build comment
+      id: build-comment
+      uses: actions/github-script@v6
+      with:
+        github-token: ${{ github.token }}
+        result-encoding: string
+        script: |
+          const fs = require('fs');
+          return "Chktex output: \n```\n" + fs.readFileSync("${{ github.workspace }}/chktex_output.txt", "utf8").toString() + "```";
+    - name: Comment in PR
+      uses: thollander/actions-comment-pull-request@v2
+      with:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        message: ${{ steps.build-comment.outputs.result }}

.github/workflows/pr-comment.yml

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+name: add artifact links to pr
+on:
+  workflow_run:
+    workflows: ["Build LaTeX document", "Build LaTeX diff document"]
+    types: [completed]
+
+jobs:
+  artifacts-url-comments:
+    name: add artifact links to pull request and related issues job
+    runs-on: [ubuntu-latest]
+    steps:
+      - name: add artifact links to pull request and related issues step
+        uses: veitbjarsch/artifacts-url-comments@v1.1.0
+        env:
+            GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        with:
+            prefix: "Here is the compiled"
+            format: "name"
+            addTo: "pull"

code/README.md

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+# Code
+
+Put all the code necessary to reproduce numerical results here.
+All results, tables and figures should be generated by running a single script.
+Add a `Project.toml` with appropriate versions here so results can be reproduced.