Backmerge: #2654 - Arrow size become 2 bonds length after indigo chan…

…ged default arrow size to 1 (#2655) backmerge to 1.26
epam · Dec 19, 2024 · 0304132 · 0304132
1 parent 743a58c
commit 0304132
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Showing 88 changed files with 3,671 additions and 3,666 deletions.
diff --git a/api/c/indigo/src/indigo_product_enumerator.cpp b/api/c/indigo/src/indigo_product_enumerator.cpp
@@ -125,7 +125,7 @@ CEXPORT int indigoReactionProductEnumerate(int reaction, int monomers)
             Reaction& out_reaction = out_reactions[k];
             if (has_coord && self.rpe_params.is_layout)
             {
-                ReactionLayout layout(out_reaction, self.smart_layout);
+                ReactionLayout layout(out_reaction, self.smart_layout, self.layout_options);
                 layout.setLayoutOrientation((LAYOUT_ORIENTATION)self.layout_orientation);
                 layout.make();
                 out_reaction.markStereocenterBonds();

diff --git a/api/c/tests/unit/tests/formats.cpp b/api/c/tests/unit/tests/formats.cpp
@@ -293,7 +293,10 @@ TEST_F(IndigoApiFormatsTest, idt_to_ket)
     obj = indigoLoadIdtFromString("ARAS", library);
     indigoSetOptionBool("json-saving-pretty", true);
     const char* res = indigoJson(obj);
-    // printf("res=%s", res);
+    // std::ofstream os(dataPath("molecules/basic/idt_mixed_std.ket"), std::ios::out | std::ios::binary);
+    // os.write(res, std::strlen(res));
+    // os.close();
+
     std::ifstream is(dataPath("molecules/basic/idt_mixed_std.ket"), std::ios::binary | std::ios::ate);
     auto size = is.tellg();
     std::string str(size, '\0'); // construct string to stream size