Skip to content

Issues: geneontology/neo

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

33 Open 53 Closed
33 Open 53 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

implement improved syntax checks
#126 opened Apr 7, 2025 by balhoff
In cases of chain identifiers, the created CURIE has double colons bug
#125 opened Apr 7, 2025 by kltm
@kltm
15
Ensure that now-present chain identifiers in the GOA GPIs are correctly propagated enhancement
#123 opened Feb 4, 2025 by kltm
1 of 2 tasks
12
add additional species names to gene labels bug
#116 opened Apr 30, 2023 by balhoff
@balhoff @kltm
49
Ecoli data is gone from NEO as the upstream source changed bug (B: affects usability)
#114 opened Mar 2, 2023 by kltm
@kltm
17
In some cases bad identifiers are getting into the load
#112 opened Jan 13, 2023 by kltm
@vanaukenk
6
Some e.coli entries not found
#111 opened Aug 25, 2022 by pgaudet
21
unresolved IDs
#106 opened Jun 30, 2022 by tmushayahama
1
@balhoff
10
Clarify and implement rules on inclusion of RNA gene products / RNA central
#99 opened May 6, 2022 by cmungall
4
Isoform display in label (originally on the visual tool)
#102 opened May 6, 2022 by pmasson55
4
Many ChEBI chemicals not available for metabolic models
#96 opened May 6, 2022 by marcfeuermann
17
NEO GOlr / Solr load does not use "modern" loader, so does not build all closures for "modern" AmiGO bug
#92 opened Apr 20, 2022 by kltm
Some Reactome Identifiers are not resolving bug
#91 opened Apr 15, 2022 by ukemi
@balhoff @kltm
11
Add some minimal QC to the NEO pipeline enhancement
#89 opened Apr 7, 2022 by kltm
14
Use ROBOT instead of owltools in NEO build
#84 opened Feb 23, 2022 by kltm
1
ChEBI : limit load to ChEBI that have 'UniProt' synonyms enhancement
#78 opened Jan 27, 2022 by pgaudet
10
Include Alliance automated gene descriptions as 'definitions' for gene entries enhancement
#75 opened Oct 11, 2021 by vanaukenk
3
consider updating wormbase expansion
#61 opened Nov 30, 2020 by balhoff
3
Remove NEO build dependency on frozen datasets.json bug
#58 opened Apr 8, 2020 by kltm
1
Identify test cases for NEO (and autocomplete) builds enhancement help wanted
#54 opened Mar 13, 2020 by kltm
1 task
1
NEO may be flooded with uninteresting tRNA ids/labels from GOA bug question
#46 opened Sep 27, 2019 by kltm
1
Include life stage ontologies in neo
#41 opened Aug 8, 2019 by vanaukenk
2
Please use http://purl.uniprot.org/uniprot or http://purl.uniprot.org/isoform/ IRIs for UniProt concepts
#34 opened Oct 22, 2018 by JervenBolleman
28
Metadata on Gene Product
#31 opened Aug 3, 2018 by lpalbou
Fold neo into main pipeline
#21 opened Aug 23, 2017 by cmungall
1
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.