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genomicssport/README.md

🧬 genomicssport: I work at Instytut Chemii Bioorganicznej Polskiej Akademii Nauk, Poznań Poland as area expert a part of a very good team and responsible for genomic analysis and software development for illumina and long read sequencing approaches. I work primarily using Python and RUST and I provide bio-software development, algorithms, bioinformatics, machine learning as an Area Expert area for Illumina and LongRead sequencing technologies across all domains of life covering plant, bacterial, fungal and humans. What i do and what i have done is outlaid below, so that you can have a broader idea of what you are looking into and what i extend. I work across all species.

🧬 Scientific and Bio-Computing Areas of Interest: I am specific to the genomics area such as RNA-seq, single cell, genomics or protein language models and biological machine and deep learning 🧬 and bio-software.

🧬 Sequencing specifics:
2010-2021: Plant, Bacterial, Fungi 🧬 RNASeq, GenomSeq, Phylogenomics, PacBio Sequencing, Single Cell Analysis, Bio-software.
2021:2023: Machine Learning, Bio-software. 🧬
2024: PanGenome, Bio-software.🧬
2025: Human Genomics🧬and Bio-software,Mobile and Blockchain Healthcare🧬

🧬 Software Development:C++(2010-2021) and now I use RUST.
🧬 Web/Solana Development: RUST,React
🧬 Bioinformatics/Data Analysis/Machine and Deep Learning: Python
❌ What i don't code anymore: C++ since 2021 (2010-2021), dropped DevOPS and Golang (2024).

🧬 Research and Topics and areas, I follow on X (previously Twitter).You will find the same on my GitHub account:

  1. Bioinformatics and Computational Biology including data science 🧬.
  2. Programming languages and tooling associated with the same,
  3. Genomics 🧬 algorithms, Machine and deep learning.

🧬 Research and Topics and areas, I dont work, read and explore: DevOPS, IOT and System Design and Management, GeoInformatics or Machine Learning.

🧬 See the commit tag as final or build release for the release.

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  1. panscape panscape Public

    reads to genome, pangenome graphs, summarize and analyze

    Rust 2

  2. eVaiutilities eVaiutilities Public

    eVaiutilities for post-eVai human genomics

    Rust 2

  3. ensemblcov ensemblcov Public

    genomics utilities for human genomics

    Rust

  4. vcfilter vcfilter Public

    population scale variant filter

    Rust 1

  5. varlinker varlinker Public

    exact point variant annotation

    Rust

  6. repgenerate repgenerate Public

    repgenerate for illumina sequencing reports

    Rust