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  1. using-cyvcf2 using-cyvcf2 Public

    Repository for Blog Article on Parsing with cyvcf2. Article ==>

    Python 7 1

  2. FuzzTypes FuzzTypes Public archive

    Pydantic extension for annotating autocorrecting fields.

    Python 219 4

Repositories

Showing 10 of 24 repositories
  • biocommons.seqrepo Public Forked from biocommons/biocommons.seqrepo

    non-redundant, compressed, journalled, file-based storage for biological sequences

    genomoncology/biocommons.seqrepo’s past year of commit activity
    Python 0 Apache-2.0 35 0 0 Updated Apr 4, 2025
  • pysam Public Forked from pysam-developers/pysam

    Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

    genomoncology/pysam’s past year of commit activity
    Cython 0 MIT 283 0 0 Updated Apr 4, 2025
  • biomcp Public

    BioMCP: Biomedical Model Context Protocol

    genomoncology/biomcp’s past year of commit activity
    Python 5 MIT 0 0 0 Updated Apr 4, 2025
  • hgvs Public Forked from biocommons/hgvs

    Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

    genomoncology/hgvs’s past year of commit activity
    Python 0 Apache-2.0 95 0 0 Updated Mar 18, 2025
  • rigor Public

    HTTP-based DSL for for validating RESTful APIs

    genomoncology/rigor’s past year of commit activity
    Python 70 MIT 6 1 3 Updated Aug 13, 2024
  • swagger-codegen Public Forked from swagger-api/swagger-codegen

    swagger-codegen contains a template-driven engine to generate documentation, API clients and server stubs in different languages by parsing your OpenAPI / Swagger definition.

    genomoncology/swagger-codegen’s past year of commit activity
    HTML 0 6,094 0 1 Updated Aug 9, 2024
  • hgvs-rs Public Forked from varfish-org/hgvs-rs

    A port of biocommons/hgvs to the Rust programming language

    genomoncology/hgvs-rs’s past year of commit activity
    Rust 0 Apache-2.0 5 0 0 Updated Aug 6, 2024
  • FuzzTypes Public archive

    Pydantic extension for annotating autocorrecting fields.

    genomoncology/FuzzTypes’s past year of commit activity
    Python 219 MIT 4 0 0 Updated Jun 20, 2024
  • django-multiselectfield Public Forked from goinnn/django-multiselectfield

    A Multiple Choice model field

    genomoncology/django-multiselectfield’s past year of commit activity
    Python 0 LGPL-3.0 211 0 0 Updated Apr 9, 2024
  • uta Public Forked from biocommons/uta

    Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image

    genomoncology/uta’s past year of commit activity
    Python 0 Apache-2.0 25 0 0 Updated Mar 15, 2024

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