Merge GEOS-Chem 14.5.2 into dev/14.6.0 #2730
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The Global Rice Patty Inventory (GRPI) as documented in Z. Chen et al. (2025) is added as the default global rice emissions inventory in CH4 and carbon simulations. The GHGI_v2 (US) and Scarpelli_Mexico rice emissions will still be used over the US and Mexico. GRPI emissions are monthly and provided at 0.1x0.1 resolution. They are based on Landsat satellite inundation data. Reference: Chen, Z., Lin, H., Balasus, N., Hardy, A., East. J.D., Zhang, Y., Runkle, B.R.K., Hancock, S.E., Taylor, C.A., Du, X., Sander, B.O., Jacob, D. J. , Global Rice Paddy Inventory (GRPI): a high-resolution inventory of methane emissions from rice agriculture based on Landsat satellite inundation data, submitted to Earth's Future, https://doi.org/10.31223/X5941Z, 2025. Signed-off-by: Melissa Sulprizio <mpayer@seas.harvard.edu>
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
.zenodo.json - Added this JSON file, which will auto-populate the various fields for auto-generation of DOIs at Zenodo for each version release. CHANGELOG.md - Updated accordingly Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
This merge brings PR # (Add .zenodo.json to auto-populate DOI fields upon version releases, by @yantosca) into the GEOS-Chem "no-diff-to-benchmark" development stream. This PR adds a .zenodo.json file to the GEOS-Chem "science codebase" repo for automatic DOI generation. Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
This merge brings PR # (Fix CO2 weekly scale factors entry in GCHP ExtData.rc for carbon simulation #2684, by @lizziel) into the GEOS-Chem "no-diff-to-benchmark" development stream. This PR fixes a typo in the ExtData.rc.carbon file so that the CO2 weekly scale factors are read and applied properly. Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
- The change of scaling factors will go into a separate PR
Met pressure unit and scaling are hard-coded for ExtData.rc and do not need to be specified as a variable setting the met-specific text files. Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
This merge brings PR #2673 which implements GRPI CH4 rice emissions for use instead of EDGAR in CH4 and carbon simulations into the 14.5.2 development stream. Signed-off-by: Melissa Sulprizio <mpayer@seas.harvard.edu>
Add run directory creation support for processed cubed-sphere GEOS-IT meteorology
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
…scover Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
GEOS_IT should be GEOS_IT_Raw on discover. Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
…d_run_scripts Add env and run scripts for MSU Orion cluster and update for NASA discover
run/GCClassic/createRunDir.sh run/GCHP/createRunDir.sh - If the simulation is fullchem, then ask user (after asking whether to backup the rundir with Git) if they wish to build the KPP-Standalone executable. - If the answer is yes, then copy run/shared/kpp_standalone_interface.yml to the run directory and print a reminder to use -DKPPSA=y when configuring and building. test/integration/GCClassic test/integration/GCHP test/parallel/GCClassic - Add an extra "n\n" at the end of the input strings to the create_rundir function for all fullchem run directories. This will tell the rundir creation to ignore building the KPP-Standalone. CHANGELOG.md - Updated accordingly Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
This merge brings PR #2712 (Do not build KPP-Standalone executable unless specifically requested at compile time, by @yantosca) into the GEOS-Chem "no-diff-to-benchmark" development stream. This PR now asks the user if they wish to build the KPP-Standalone executable at run directory creation time. A reminder will be printed to configure with -DKPPSA=y, and the kpp_standalone_interface.yml file will be copies to the run directory. Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
This merge brings updates from the "no-diff-to-benchmark" development stream into the release/14.5.2 branch, in anticipation of the GEOS-Chem (science codebase) 14.5.2 release. Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
CHANGELOG.md - Updated version number to 14.5.2 and added release date Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
Updated version numbers in: - CHANGELOG.md Please see CHANGELOG.md for updates added to this version. Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
yantosca
added
category: Feature Request
msulprizio
approved these changes
Feb 14, 2025
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All GEOS-Chem Classic integration tests passed: ==============================================================================
GEOS-Chem Classic: Execution Test Results
CodeDir : 71b86c6 Merge GCClassic 14.5.2 into dev/14.6.0
GEOS-Chem : b07fab7d7 Merge GEOS-Chem 14.5.2 into dev/14.6.0
HEMCO : 2423647 Merge PR #279 (Use USTAR from met in DustDEAD extension)
Cloud-J : f8a2b7f Update version number for 8.0.1 release
HETP : 2a99b24 Merge pull request #2 from geoschem/bugfix/initialize_local_variables
Using 24 OpenMP threads
Number of execution tests: 30
Submitted as SLURM job: 3855867
==============================================================================
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%% All execution tests passed! %%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%All tests were zero-diff w/r/t 14.5.0-alpha.5 except:
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All GCHP integration tests passed: ==============================================================================
GCHP: Execution Test Results
CodeDir : 503fe2c Merge GCHP 14.5.2 into dev/14.6.0
MAPL : 6207fd0 Merge pull request #38 from geoschem/bugfix/intel_build_error_in_AbstractComponent
GMAO_Shared : 4ddb3ec Merge pull request #2 from geoschem/feature/mapl-upgrade
ESMA_cmake : ad5deba Added ecbuild as a submodule of ESMA_cmake
gFTL-shared : 4b82492 Merge branch 'upstream_v1.5.0' into feature/v1.5.0
FMS : 259759d Merge pull request #3 from geoschem/feature/update_gmao_libs
FVdycoreCubed : af42462 Merge PR #8 (Add PLEadv diagnostic for offline advection in GCHP)
geos-chem : b07fab7d7 Merge GEOS-Chem 14.5.2 into dev/14.6.0
HEMCO : 2423647 Merge PR #279 (Use USTAR from met in DustDEAD extension)
yaFyaml : 19afe50 Merge branch 'upstream_v1.0.4' into feature/v1.0.4
pFlogger : 2c4b724 Merge branch 'upstream_v1.9.1' into feature/v1.9.1
Cloud-J : f8a2b7f Update version number for 8.0.1 release
HETP : 2a99b24 Merge pull request #2 from geoschem/bugfix/initialize_local_variables
Number of execution tests: 12
Submitted as SLURM job: 3856235
==============================================================================
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%% All execution tests passed! %%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%All tests were zero-diff w/r/t 14.6.0-alpha.6 except for:
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Name and Institution (Required)
Name: Bob Yantosca
Institution: Harvard + GCST
Describe the update
This PR seeks to merge the updates from GEOS-Chem 14.5.2 into the GEOS-Chem 14.6.0 development stream (branch dev/14.6.0).
Expected changes
This will be a zero-diff update as 14.5.2 did not contain any updates that change benchmark simulations.
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