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Changed multi-processing procedure to read through the input file line-by-line and process chunks of input in parallel. This replaces the previous strategy of splitting the input file into separate files to process, which resulted in undesired duplications of large files and multiple reads of the input file.
Improved logging to give more frequent updates as the program is running and better formatting of the updates.
Removed the -i option that allowed for multiple input files to be specified in a single run. Equivalent behavior can be replicated by the user running Referee multiple times on multiple input files with job scheduling tools (such as SLURM or GNU parallel).