Merge pull request #40 from harvardinformatics/develop

fixed missing return value in getVariants
harvardinformatics · Jun 15, 2023 · edada33 · edada33
2 parents 3877271 + e47fb59
commit edada33
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/degenotate_lib/params.py b/degenotate_lib/params.py
@@ -26,8 +26,8 @@ def __setitem__(self, key, value):
 
 def init():
     globs_init = {
-        'version' : '1.2.1',
-        'releasedate' : "May 2023",
+        'version' : '1.2.2',
+        'releasedate' : "June 2023",
         'authors' : "Timothy Sackton, Gregg Thomas",
         'doi' : '',
         'http' : 'https://github.com/harvardinformatics/degenotate',

diff --git a/degenotate_lib/vcf.py b/degenotate_lib/vcf.py
@@ -95,7 +95,7 @@ def getVariants(globs, transcript, transcript_region, codons, extra_leading_nt,
     # Check if records returns anything
     if empty:
     # No record at this position, which means no variation in this transcript
-        return mk_codons;
+        return mk_codons, globs;
     else:
     # one or more records at this position    
         for rec in transcript_records: