v1.3.0

• Metadata:
  • one can now assign key, value and units separately to update a metadata entry
  • When the Units of a metadata item are empty, then it will be displayed and treated in iBridges as ''
• Search:
  • The search now returns a list of CachedIrodsPath. This improves the performance when retrieving sizes and checksums.
• Data operations:
  • New flag to disable the tqdm status bar when working with a lot of parallel transfers
• Bugfix
  • Password field was not shown in Jupyter notebooks --> fixed

What's Changed

• Add documenation to main --> render RTD by @chStaiger in #186
• New minor release by @chStaiger in #190
• new version 0.2.2 by @chStaiger in #193
• v0.2.3 by @chStaiger in #211
• v0.2.4 by @chStaiger in #215
• v1.0.0 by @chStaiger in #219
• Update README.md by @chStaiger in #220
• v1.0.1 by @chStaiger in #234
• V1.1.0 by @chStaiger in #256
• Small updates for v1.1.1 by @chStaiger in #271
• v1.2.0 by @chStaiger in #280
• MetaData rework by @qubixes in #281
• Search: Returning CachedIrodsPath for data objects by @chStaiger in #283
• Allow the tqdm progress bar to be disabled by @qubixes in #284
• 285 metadata tutorial by @chStaiger in #286
• bug fix for ipython by @chStaiger in #288
• Add setitem to metadata object and rename _rename method by @qubixes in #289
• Improve error catching and message for add by @chStaiger in #290
• v1.3.0 by @chStaiger in #291

Full Changelog: v1.2.0...v1.3.0

v1.2.0

• Cache scrambled non-pam passwords
• Add case sensitive search
• Protection of metadata wth keys starting with org_

What's Changed

• Change all the links to the new organization by @qubixes in #272
• store actual password when no pam negotiation has happened by @mmaschenk in #274
• Update sphinx requirement from <8 to <9 by @dependabot in #273
• Cache packages and fix 3.12 issue by @qubixes in #276
• add param case_sensitive, by default False. by @chStaiger in #268
• Metadata blacklist by @chStaiger in #279

New Contributors

• @mmaschenk made their first contribution in #274

Full Changelog: v1.1.1...v1.2.0

v1.1.1

What's Changed

Move a to a new GitHub Organisation

• Update README.md by @chStaiger in #261
• Use older version of sphinx by @qubixes in #262
• 263 timeout by @chStaiger in #264
• extending faqs by @chStaiger in #269
• Optimize the use of GitHub Actions resources by @J535D165 in #266
• Small edits, code formatting and typos by @chStaiger in #270

---

• Adding mkdir to CLI by @chStaiger in #137
• Move data objects and collections by @chStaiger in #136
• Create dependabot.yml by @dometto in #143
• Check for host and port before checking network by @chStaiger in #139
• Update sphinx requirement from <7.0.0 to <8.0.0 by @dependabot in #145
• Turning network_check into class method for GUI by @chStaiger in #146
• Install doc by @chStaiger in #147
• Fix docstring formatting error by @qubixes in #140
• Add sync documentation. by @chStaiger in #148
• Ipath doc by @chStaiger in #149
• Ipath doc by @chStaiger in #153
• Move functions to utils by @qubixes in #151
• Add missing search for data_name by @chStaiger in #161
• Rework API documentation by @qubixes in #156
• Bugfix in search by @chStaiger in #162
• Don't use assert for control flow by @dometto in #166
• Update iRODS path tutorial. by @chStaiger in #165
• Sync update by @qubixes in #158
• Add tree for the iBridges CLI by @qubixes in #159
• Fix spelling errors in the README by @qubixes in #171
• Rewrite download/upload by @qubixes in #169
• Cleanup tutorials. Create a First steps tutorial for the impatient. by @chStaiger in #174
• Fix behavior of parent property of IrodsPath by @qubixes in #175
• Fix tutorials by @chStaiger in #177
• Turn None time into empty string in listing tickets. by @chStaiger in #178
• Add examples by @qubixes in #180
• Docs cli by @chStaiger in #179
• Don't perform operations for files/dataobjects by @qubixes in #182
• Rtd by @chStaiger in #183
• Update README.md by @qubixes in #184
• Update README.md by @dometto in #188
• Improve timeout situation with large files by @qubixes in #189
• Fix operations with no up or download by @qubixes in #192
• Add question if ibridges not in PATH by @qubixes in #194
• Add 3.12 to classifiers by @qubixes in #198
• Fix issue where root collection lists itself by @qubixes in #205
• Treat path as string pattern by @chStaiger in #200
• Compute tutorial for streaming data by @chStaiger in #196
• Change default connection timeout to 25000 by @qubixes in #204
• Easy connect to iRODS servers by @qubixes in #207
• Fix did not work with cached passwords by @qubixes in #214
• Add question for NetworkError by @qubixes in #212
• Ignore symlinks creating operations by @qubixes in #216
• Prep v1.0.0 by @chStaiger in #217
• Create v1.0.0 by @chStaiger in #218
• Update README.md by @trel in #221
• Small change to be able to call the interactive auth from within R by @chStaiger in #222
• Update README.md by @qubixes in #223
• 225 irods folder by @chStaiger in #226
• Implement aliases for the CLI by @qubixes in #210
• Metadata up down by @qubixes in #224
• Doc update for iBridges 1.1 by @qubixes in #227
• Update docstrings across the board by @qubixes in #232
• Update integration-tests-yoda.yml release-1.9 by @chStaiger in #235
• Update sphinx requirement from <8.0.0 to <9.0.0 by @dependabot in #237
• Fix f-string issue in error message by @qubixes in #240
• Main by @chStaiger in #244
• Modify progress bar to be updated during single files by @qubixes in #242
• Fix obj_put not setting overwrite flag by @qubixes in #247
• Make the iBridges search more easy to use by @qubixes in #239
• Add feature to directly open files with IrodsPath by @qubixes in #241
• Switch to IrodsPath, rename function by @chStaiger in #249
• Check for md5 checksums if remote uses that by @qubixes in #248
• Fix overwrite / ignore_err flags in upload and download by @qubixes in #254
• Notebooks by @chStaiger in #260
• Update README.md by @chStaiger in #261
• Use older version of sphinx by @qubixes in #262
• 263 timeout by @chStaiger in #264
• extending faqs by @chStaiger in #269
• Optimize the use of GitHub Actions resources by @J535D165 in #266
• Small edits, code formatting and typos by @chStaiger in #270

New Contributors

• @dependabot made their first contribution in #145
• @trel made their first contribution in #221
• @J535D165 made their first contribution in #266

Full Changelog: v0.2.0...v1.1.1

v1.1.0

API:

New progress bar taking the latest PRC development into account
Bugfix for data transfers: overwrite flag was not handled correctly
New search function: Path to search in, path pattern and metadata searches taking units into account
Open data objects from their IrodsPath
Support for md5 checksums in data transfers
CLI:

Search functionality

What's Changed

• Update sphinx requirement from <8.0.0 to <9.0.0 by @dependabot in #237
• Fix f-string issue in error message by @qubixes in #240
• Main by @chStaiger in #244
• Modify progress bar to be updated during single files by @qubixes in #242
• Fix obj_put not setting overwrite flag by @qubixes in #247
• Make the iBridges search more easy to use by @qubixes in #239
• Add feature to directly open files with IrodsPath by @qubixes in #241
• Switch to IrodsPath, rename function by @chStaiger in #249
• Check for md5 checksums if remote uses that by @qubixes in #248
• Fix overwrite / ignore_err flags in upload and download by @qubixes in #254
• V1.1.0 by @chStaiger in #256

Full Changelog: v1.0.1...v1.1.0

v1.0.1

New fetatures:

• Streaming the password to the interactive_auth, important when CLI is used from another programming language like R

• CLI: creating and using aliases for the connection parameters

• API:

  • The metadata can now be accessed from the IrodsPath directly
  • Export metadata of a collection and all its members as a json file.
  • Upload: data can be automatically tagged with metadata.
  • Download: metadata can be exported in when downloading data.

• Calling the CLI will create the .irods folder, if not present

What's Changed

• Adding mkdir to CLI by @chStaiger in #137
• Move data objects and collections by @chStaiger in #136
• Create dependabot.yml by @dometto in #143
• Check for host and port before checking network by @chStaiger in #139
• Update sphinx requirement from <7.0.0 to <8.0.0 by @dependabot in #145
• Turning network_check into class method for GUI by @chStaiger in #146
• Install doc by @chStaiger in #147
• Fix docstring formatting error by @qubixes in #140
• Add sync documentation. by @chStaiger in #148
• Ipath doc by @chStaiger in #149
• Ipath doc by @chStaiger in #153
• Move functions to utils by @qubixes in #151
• Add missing search for data_name by @chStaiger in #161
• Rework API documentation by @qubixes in #156
• Bugfix in search by @chStaiger in #162
• Don't use assert for control flow by @dometto in #166
• Update iRODS path tutorial. by @chStaiger in #165
• Sync update by @qubixes in #158
• Add tree for the iBridges CLI by @qubixes in #159
• Fix spelling errors in the README by @qubixes in #171
• Rewrite download/upload by @qubixes in #169
• Cleanup tutorials. Create a First steps tutorial for the impatient. by @chStaiger in #174
• Fix behavior of parent property of IrodsPath by @qubixes in #175
• Fix tutorials by @chStaiger in #177
• Turn None time into empty string in listing tickets. by @chStaiger in #178
• Add examples by @qubixes in #180
• Docs cli by @chStaiger in #179
• Don't perform operations for files/dataobjects by @qubixes in #182
• Rtd by @chStaiger in #183
• Update README.md by @qubixes in #184
• Update README.md by @dometto in #188
• Improve timeout situation with large files by @qubixes in #189
• Fix operations with no up or download by @qubixes in #192
• Add question if ibridges not in PATH by @qubixes in #194
• Add 3.12 to classifiers by @qubixes in #198
• Fix issue where root collection lists itself by @qubixes in #205
• Treat path as string pattern by @chStaiger in #200
• Compute tutorial for streaming data by @chStaiger in #196
• Change default connection timeout to 25000 by @qubixes in #204
• Easy connect to iRODS servers by @qubixes in #207
• Fix did not work with cached passwords by @qubixes in #214
• Add question for NetworkError by @qubixes in #212
• Ignore symlinks creating operations by @qubixes in #216
• Prep v1.0.0 by @chStaiger in #217
• Create v1.0.0 by @chStaiger in #218
• Update README.md by @trel in #221
• Small change to be able to call the interactive auth from within R by @chStaiger in #222
• Update README.md by @qubixes in #223
• 225 irods folder by @chStaiger in #226
• Implement aliases for the CLI by @qubixes in #210
• Metadata up down by @qubixes in #224
• Doc update for iBridges 1.1 by @qubixes in #227
• Update docstrings across the board by @qubixes in #232
• Update integration-tests-yoda.yml release-1.9 by @chStaiger in #235

New Contributors

• @dependabot made their first contribution in #145
• @trel made their first contribution in #221

Full Changelog: v0.2.0...v1.0.1

v1.0.0

What's Changed

• Ignore symlinks creating operations by @qubixes in #216
• Prep v1.0.0 by @chStaiger in #217
• Create v1.0.0 by @chStaiger in #218
• v1.0.0 by @chStaiger in #219

Full Changelog: v0.2.4...v1.0.0

v0.2.4

What's Changed

• Fix did not work with cached passwords by @qubixes in #214
• Add question for NetworkError by @qubixes in #212
• v0.2.4 by @chStaiger in #215

Full Changelog: v0.2.3...v0.2.4

v0.2.3

What's Changed

• Add question if ibridges not in PATH by @qubixes in #194
• Add 3.12 to classifiers by @qubixes in #198
• Fix issue where root collection lists itself by @qubixes in #205
• Treat path as string pattern by @chStaiger in #200
• Compute tutorial for streaming data by @chStaiger in #196
• Change default connection timeout to 25000 by @qubixes in #204
• Easy connect to iRODS servers by @qubixes in #207
• v0.2.3 by @chStaiger in #211

Full Changelog: v0.2.2...v0.2.3

v0.2.2

Bug fix.

v0.2.1

Improve transfer of single large files.