Ontology loader #923
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Ontology loader #923
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…e into ontology-load
1. Refactored the existing job to with explicit ENVO
source
2. Added new job for loading the Uberon ontology:
3. Added new job for loading the Plant Ontology:
4. Created separate weekly schedules for each ontology loading job
5. Updated log messages to show the correct ontology source
6. Updated all references to use the new job names
All three jobs use the same underlying method but with different source_ontology
parameters.
…e into ontology-load
…e into ontology-load
…e into ontology-load
…I runs as it does do updates in the db
…'t launch with it
…e into ontology-load
…e into ontology-load
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This PR adds a dagster job for loading ontologies. For now, it uses the default ontology configured in the ontology-loader package (ENVO). Its implementation parallels development of the "alldocs" job runner (but has nothing to do with referential integrity or the alldocs collection specifically).
It echoes the implementation in that it:
The other changes are to README and in-line doc to document the places I needed to look elsewhere for information.
fixes microbiomedata/issues#1055