Code

Fix anndata concatenation#416

Code

Merged

nictru merged 12 commits intonf-core:devnf-core/scrnaseq:devfrom nictru:anndata-concatenationnictru/scrnaseq:anndata-concatenationCopy head branch name to clipboardJan 15, 2025

+457-151

Commits

Commits on Jan 11, 2025

• Remove h5ad_conversion indent

  nictru

  committed
  f9d01cf

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• Fix problems in h5ad concatenation

  nictru

  committed
  82dc462

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• Restructure empty droplet calling and h5ad conversion

  nictru

  committed
  2e2da03

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• Remove outdated local module

  nictru

  committed
  51b64fa

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• Fix ANNDATA_BARCODES module config specifier

  nictru

  committed
  549d237

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• Make sure per-sample h5ads are also converted to RDS

  nictru

  committed
  c9c9167

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• Fix some meta map details

  nictru

  committed
  5c05db3

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• Decrease number of expected executed tasks for all aligners

  nictru

  committed
  e25b179

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• Adjust remaining task number tests

  nictru

  committed
  a8e46f2

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Commits on Jan 15, 2025

• Merge branch 'dev' into anndata-concatenation

  grst

  authored
  3fb71b1

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• Merge branch 'dev' into anndata-concatenation

  nictru

  authored
  606a36b

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• Update cellbender/removebackground sha

  nictru

  committed
  d99d05c

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