Test

Add scGPT: Zero-shot application #18

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Job	Run time
test / List components to test	31s
test / Test (majority_vote, control_methods, src/control_methods/majority_vote/config.vsh.yaml, src/cont...	55s
test / Test (true_labels, control_methods, src/control_methods/true_labels/config.vsh.yaml, src/control_...	1m 39s
test / Test (random_labels, control_methods, src/control_methods/random_labels/config.vsh.yaml, src/cont...	58s
test / Test (accuracy, metrics, src/metrics/accuracy/config.vsh.yaml, src/metrics/accuracy/, python_scri...	1m 3s
test / Test (f1, metrics, src/metrics/f1/config.vsh.yaml, src/metrics/f1/, python_script, metrics/f1)	56s
test / Test (process_dataset, data_processors, src/data_processors/process_dataset/config.vsh.yaml, src/...	1m 42s
test / Test (scanvi, methods, src/methods/scanvi/config.vsh.yaml, src/methods/scanvi/, python_script, me...	6m 4s
test / Test (scgpt_zero_shot, methods, src/methods/scgpt_zero_shot/config.vsh.yaml, src/methods/scgpt_ze...	5m 37s
test / Test (logistic_regression, methods, src/methods/logistic_regression/config.vsh.yaml, src/methods/...	1m 39s
test / Test (mlp, methods, src/methods/mlp/config.vsh.yaml, src/methods/mlp/, python_script, methods/mlp)	1m 54s
test / Test (singler, methods, src/methods/singler/config.vsh.yaml, src/methods/singler/, r_script, meth...	1m 22s
test / Test (xgboost, methods, src/methods/xgboost/config.vsh.yaml, src/methods/xgboost/, python_script,...	1m 2s
test / Test (naive_bayes, methods, src/methods/naive_bayes/config.vsh.yaml, src/methods/naive_bayes/, py...	1m 59s
test / Test (scanvi_scarches, methods, src/methods/scanvi_scarches/config.vsh.yaml, src/methods/scanvi_s...	6m 6s
test / Test (seurat_transferdata, methods, src/methods/seurat_transferdata/config.vsh.yaml, src/methods/...	2m 31s
test / Test (knn, methods, src/methods/knn/config.vsh.yaml, src/methods/knn/, python_script, methods/knn)	1m 4s
	37m 2s