Use local test resource in run_test_local.sh

openproblems-bio · Dec 16, 2024 · 4adb095 · 4adb095
1 parent d7fc0a1
commit 4adb095
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diff --git a/scripts/run_benchmark/run_test_local.sh b/scripts/run_benchmark/run_test_local.sh
@@ -17,7 +17,7 @@ publish_dir="resources/results/${RUN_ID}"
 
 # write the parameters to file
 cat > /tmp/params.yaml << HERE
-input_states: s3://openproblems-data/resources_test/task_label_projection/**/state.yaml
+input_states: resources_test/task_label_projection/**/state.yaml
 rename_keys: 'input_train:output_train;input_test:output_test;input_solution:output_solution'
 output_state: "state.yaml"
 publish_dir: "$publish_dir"

diff --git a/src/workflows/run_benchmark/main.nf b/src/workflows/run_benchmark/main.nf
@@ -23,10 +23,10 @@ methods = [
   scimilarity_knn.run(
     args: [model: file("s3://openproblems-work/cache/scimilarity-model_v1.1.tar.gz")]
   ),
+  scgpt_zero_shot,
   seurat_transferdata,
   singler,
   xgboost,
-  scgpt_zero_shot
 ]
 
 metrics = [