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openproblems-bio / task_spatial_simulators Public

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Test

update scDesign2 script #133

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update scDesign2 script

update scDesign2 script #133

Summary
Jobs
- List components to test
  
  Test (splatter, methods, src/methods/splatter/config.vsh.yaml, src/methods/splatter/, r_script, m...
  
  Test (scdesign3, methods, src/methods/scdesign3/config.vsh.yaml, src/methods/scdesign3/, r_script...
  
  Test (sparsim, methods, src/methods/sparsim/config.vsh.yaml, src/methods/sparsim/, r_script, meth...
  
  Test (srtsim, methods, src/methods/srtsim/config.vsh.yaml, src/methods/srtsim/, r_script, methods...
  
  Test (scdesign2, methods, src/methods/scdesign2/config.vsh.yaml, src/methods/scdesign2/, r_script...
  
  Test (zinbwave, methods, src/methods/zinbwave/config.vsh.yaml, src/methods/zinbwave/, r_script, m...
  
  Test (symsim, methods, src/methods/symsim/config.vsh.yaml, src/methods/symsim/, r_script, methods...
  
  Test (ks_statistic_sc_features, metrics, src/metrics/ks_statistic_sc_features/config.vsh.yaml, sr...
  
  Test (ks_statistic_spatial, metrics, src/metrics/ks_statistic_spatial/config.vsh.yaml, src/metric...
  
  Test (downstream, metrics, src/metrics/downstream/config.vsh.yaml, src/metrics/downstream/, r_scr...
  
  Test (ks_statistic_gene_cell, metrics, src/metrics/ks_statistic_gene_cell/config.vsh.yaml, src/me...
  
  Test (negative, control_methods, src/control_methods/negative/config.vsh.yaml, src/control_method...
  
  Test (positive, control_methods, src/control_methods/positive/config.vsh.yaml, src/control_method...
  
  Test (convert, process_datasets, src/process_datasets/convert/config.vsh.yaml, src/process_datase...
  
  Test (sc_features, process_datasets, src/process_datasets/sc_features/config.vsh.yaml, src/proces...
  
  Test (precompute_downstream, process_datasets, src/process_datasets/precompute_downstream/config....
  
  Test (generate_sim_spatialcluster, process_datasets, src/process_datasets/generate_sim_spatialclu...
Run details
- Usage
- Workflow file

Usage Workflow file

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update scDesign2 script #133

build / Test (positive, control_methods, src/control_methods/positive/config.vsh.yaml, src/control_method...

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