wip api for simulated dataset

openproblems-bio · Jul 8, 2024 · 50a7f55 · 50a7f55
1 parent 8c22338
commit 50a7f55
Show file tree

Hide file tree

Showing 7 changed files with 10 additions and 99 deletions.
diff --git a/src/api/comp_control_method.yaml b/src/api/comp_control_method.yaml
@@ -7,16 +7,12 @@ info:
     description: |
       A control method to predict effects.
 arguments:
-  - name: --input_train
-    __merge__: file_train_h5ad.yaml
+  - name: --input
+    __merge__: file_dataset_sp.yaml
     required: false
     direction: input
-  - name: --input_test
-    __merge__: file_test_h5ad.yaml
-    required: true
-    direction: input
   - name: --output
-    __merge__: file_prediction.yaml
+    __merge__: file_simulated_dataset.yaml
     required: true
     direction: output
 test_resources:

diff --git a/src/api/comp_method.yaml b/src/api/comp_method.yaml
@@ -7,12 +7,12 @@ info:
     description: |
       A method to predict the task effects.
 arguments:
-  - name: --input_train
-    __merge__: file_train_h5ad.yaml
+  - name: --input
+    __merge__: file_dataset_sp.yaml
     required: false
     direction: input
   - name: --output
-    __merge__: file_prediction.yaml
+    __merge__: file_simulated_dataset.yaml
     required: true
     direction: output
 test_resources:

diff --git a/src/api/comp_metric.yaml b/src/api/comp_metric.yaml
@@ -7,12 +7,12 @@ info:
     description: |
       A metric for evaluating method predictions.
 arguments:
-  - name: "--input_test"
-    __merge__: file_test_h5ad.yaml
+  - name: "--input_spatial_dataset"
+    __merge__: file_dataset_sp.yaml
     direction: input
     required: true
-  - name: "--input_prediction"
-    __merge__: file_prediction.yaml
+  - name: "--input_simulated_dataset"
+    __merge__: file_simulated_dataset
     direction: input
     required: true
   - name: "--output"

diff --git a/src/api/file_prediction.yaml b/src/api/file_prediction.yaml
diff --git a/src/api/file_solution.yaml → src/api/file_simulated_dataset.yaml b/src/api/file_solution.yaml → src/api/file_simulated_dataset.yaml
diff --git a/src/api/file_test_h5ad.yaml b/src/api/file_test_h5ad.yaml
diff --git a/src/api/file_train_h5ad.yaml b/src/api/file_train_h5ad.yaml