Repositories list

• evo2

  Public
  Genome modeling and design across all domains of life

  Jupyter Notebook

  •

  Apache License 2.0

  •241•2.5k•23•1•Updated Mar 6, 2025Mar 6, 2025

• scRecounter

  Public
  Nextflow pipeline to re-process all public single-cell RNA-seq data

  Jupyter Notebook

  •

  MIT License

  •1•11•0•0•Updated Mar 5, 2025Mar 5, 2025

• SRAgent

  Public
  LLM agents for working with the SRA and associated bioinformatics databases.

  Python

  •

  MIT License

  •2•39•0•0•Updated Mar 5, 2025Mar 5, 2025

• arc-virtual-cell-atlas

  Public
  Arc Virtual Cell Atlas

  Jupyter Notebook

  •18•223•3•0•Updated Mar 5, 2025Mar 5, 2025

• scBaseCamp_analysis

  Public
  Analysis of scBaseCamp data

  Jupyter Notebook

  •0•0•0•0•Updated Feb 27, 2025Feb 27, 2025

• ScreenPro2

  Public
  Flexible analysis of high-content CRISPR screening

  crispr-analysiscrisprphenotypes+ 6crispr-cas9functional-genomicsngs-analysisperturbation-screensequencing-datacrispr-cas12

  Python

  •

  Other

  •5•28•11•0•Updated Feb 10, 2025Feb 10, 2025

• arc-cluster-toolkit

  Public
  Cluster Toolkit is an open-source software offered by Google Cloud which makes it easy for customers to deploy AI/ML and HPC environments on Google Cloud.

  HCL

  •

  Apache License 2.0

  •169•1•0•0•Updated Dec 26, 2024Dec 26, 2024

• InVivoMultimodalPerturbation

  Public
  Python

  •1•0•0•0•Updated Aug 29, 2024Aug 29, 2024

• bridge-rna-designer

  Public
  A command line and web interface for designing Bridge RNAs for Bridge Editing.

  Python

  •

  MIT License

  •0•1•0•0•Updated Aug 25, 2024Aug 25, 2024

• RNAtargeting_web_custom

  Public
  source code of the custom page for the RNA targeting website - Cas13d guide design

  C

  •

  MIT License

  •0•5•1•0•Updated Mar 7, 2024Mar 7, 2024