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    210 repositories

    • ensembl-web-tools-api

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • ensembl-web-metadata-api

      Public
      Metadata API for beta.ensembl.org
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • public-plugins

      Public
      Plugins for an Ensembl website
      JavaScript
      •
      Apache License 2.0
      •46•9•0•4•Updated Jan 15, 2025Jan 15, 2025

    • ensembl-production-imported

      Public
      Production pipelines used by data-teams to process imported genomes (former EnsemblGenomes pipelines)
      Perl
      •
      Apache License 2.0
      •4•1•0•0•Updated Jan 15, 2025Jan 15, 2025

    • ensembl-production-metazoa

      Public
      Metazoan production helper library and script to import ad-hoc annotations.
      Shell
      •
      Apache License 2.0
      •1•1•0•0•Updated Jan 15, 2025Jan 15, 2025

    • plant-scripts

      Public
      Scripting analyses of genomes in Ensembl Plants
      Perl
      •
      Apache License 2.0
      •9•38•1•0•Updated Jan 15, 2025Jan 15, 2025

    • ensembl-metadata-api

      Public
      ensembl_genome_metadata schema SQLAlchemy ORM layer
      Python
      •
      Apache License 2.0
      •2•1•0•2•Updated Jan 15, 2025Jan 15, 2025

    • ensembl-compara

      Public
      The Ensembl Compara Perl API and SQL schema
      mysqlapibioinformaticsdatabasecomparative-genomicsperlensembl
      Perl
      •
      Apache License 2.0
      •69•51•0•4•Updated Jan 15, 2025Jan 15, 2025

    • ensembl-genomio

      Public
      Pipelines to turn basic genomic data into Ensembl cores and back
      Python
      •
      Apache License 2.0
      •7•9•0•2•Updated Jan 15, 2025Jan 15, 2025

    • ensembl-client

      Public
      Ensembl beta client
      TypeScript
      •
      Apache License 2.0
      •4•13•0•2•Updated Jan 14, 2025Jan 14, 2025

    • tark

      Public
      HTML
      •
      Apache License 2.0
      •3•4•4•2•Updated Jan 14, 2025Jan 14, 2025

    • ensembl-production

      Public
      Ensembl Production code
      Perl
      •
      Apache License 2.0
      •42•11•0•9•Updated Jan 14, 2025Jan 14, 2025

    • ensembl-webcode

      Public
      The code to run an Ensembl website
      Perl
      •
      Apache License 2.0
      •51•22•0•0•Updated Jan 14, 2025Jan 14, 2025

    • ensembl-vep

      Public
      The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
      Perl
      •
      Apache License 2.0
      •154•463•60•8•Updated Jan 14, 2025Jan 14, 2025

    • ensembl-web-track-api

      Public
      A Django app for serving the available annotation tracks for Ensembl client.
      Python
      •
      Apache License 2.0
      •0•1•0•1•Updated Jan 14, 2025Jan 14, 2025

    • VEP_plugins

      Public
      Plugins for the Ensembl Variant Effect Predictor (VEP)
      Perl
      •
      Apache License 2.0
      •118•143•6•2•Updated Jan 13, 2025Jan 13, 2025

    • ensembl-thoas

      Public
      Son of Ariadne, a GraphQL server and supporting software
      Python
      •
      Apache License 2.0
      •0•2•0•4•Updated Jan 13, 2025Jan 13, 2025

    • thr

      Public
      Second implementation of Trackhub Registry
      Python
      •
      Apache License 2.0
      •2•1•0•1•Updated Jan 13, 2025Jan 13, 2025

    • thr_frontend

      Public
      JavaScript
      •
      Apache License 2.0
      •0•1•0•15•Updated Jan 13, 2025Jan 13, 2025

    • tark-loader

      Public
      Perl
      •
      Apache License 2.0
      •2•0•0•1•Updated Jan 13, 2025Jan 13, 2025

    • gifts_rest

      Public
      Python
      •
      Apache License 2.0
      •5•0•0•7•Updated Jan 13, 2025Jan 13, 2025

    • ensembl-hive

      Public
      EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
      mysqlpythondockerpipelinesqliteperlpostgresqlslurmehiveensembl
      Perl
      •
      Apache License 2.0
      •28•53•0•2•Updated Jan 13, 2025Jan 13, 2025

    • ensembl-variation

      Public
      The Ensembl Variation Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •55•27•0•12•Updated Jan 8, 2025Jan 8, 2025

    • Bio-DB-HTS

      Public
      Git repo for Bio::DB::HTS module on CPAN, providing Perl links into HTSlib
      Perl
      •
      Apache License 2.0
      •16•24•8•0•Updated Jan 7, 2025Jan 7, 2025

    • ols-client

      Public
      Python
      •
      Apache License 2.0
      •2•6•0•1•Updated Jan 6, 2025Jan 6, 2025

    • ols-ensembl-loader

      Public
      Python
      •
      Apache License 2.0
      •2•0•0•3•Updated Jan 6, 2025Jan 6, 2025

    • ensembl-refget

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

    • ensembl-rest

      Public
      Language agnostic RESTful data access to Ensembl data over HTTP
      Perl
      •
      Apache License 2.0
      •63•141•1•0•Updated Jan 6, 2025Jan 6, 2025

    • ensembl-io

      Public
      File parsing and writing code for Ensembl
      Perl
      •
      Apache License 2.0
      •18•10•0•1•Updated Jan 6, 2025Jan 6, 2025

    • ensembl

      Public
      The Ensembl Core Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •76•80•1•1•Updated Jan 6, 2025Jan 6, 2025