new version v.0.2.0 introducing assignment_mixture for mixture assign…

…ment analysis

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: assigner
 Type: Package
 Title: Assignment Analysis with GBS/RADseq Data using R
-Version: 0.1.9
-Date: 2015-03-04
+Version: 0.2.0
+Date: 2015-04-06
 Encoding: UTF-8
 Authors@R: c(
   person("Thierry", "Gosselin", email = "thierrygosselin@icloud.com", role = c("aut", "cre")))

NAMESPACE

@@ -1,6 +1,7 @@
 # Generated by roxygen2: do not edit by hand
 
 export(assignment_genodive)
+export(assignment_mixture)
 export(assignment_ngs)
 export(dlr)
 export(gsi_sim_binary)

R/assignment_ngs.R

@@ -1,7 +1,8 @@
 # Write a gsi_sim file from STACKS VCF file
 
 #' @name assignment_ngs
-#' @title Assignment analysis in gsi_sim with GBS/RADseq data produced by STACKS workflow
+#' @title Assignment analysis of next-generation sequencing data (GBS/RADseq, 
+#' SNP chip, etc) using gsi_sim and adegenet. 
 #' @description \code{gsi_sim} is a tool for doing and simulating genetic stock
 #' identification and developed by Eric C. Anderson.
 #' The arguments in the \code{assignment_ngs} function were tailored for the
@@ -230,7 +231,7 @@
 #' Things are set up so that it will try running gsi_sim, and if it does not find it, the 
 #' program will throw an error and ask the user to run \code{\link{install_gsi_sim}}
 #' which will do its best to put a usable copy of gsi_sim where it is needed.  To do 
-#' so, you must be connected to the internet.  If that doesn't work, you will
+#' so, you must be connected to the internet. If that doesn't work, you will
 #' need to compile the program yourself, or get it yourself, and the manually copy
 #' it to \code{file.path(system.file(package = "assigner"), "bin", "gsi_sim")}.
 #' To compile gsi_sim, follow the 

README.md

@@ -140,6 +140,12 @@ The Amazon image can be imported into Google Cloud Compute Engine to start a new
 
 ## New
 
+**v.0.2.0**
+* new function: `assignment_mixture` for mixture analysis.
+
+**v.0.1.9**
+* Simplified gsi_sim install
+
 **v.0.1.8**
 * You can now opt between [gsi_sim] (https://github.com/eriqande/gsi_sim) or [adegenet] (https://github.com/thibautjombart/adegenet), a R package developed by Thibaul Jombart, to conduct the assignment analysis