prophyle / prophyle Star 34 Code Issues Pull requests Accurate, resource-frugal and deterministic DNA sequence classifier. bioinformatics metagenomics viruses bwt bacteria phylogeny metagenomic-classification burrows-wheeler-transform k-mers phylogenetic-compression simplitigs prophyle Updated Apr 1, 2025 Python
karel-brinda / MiniPhy Star 30 Code Issues Pull requests Phylogenetic compression of extremely large genome collections [661k βππ²ππΆπ | BIGSIdata βπ°π΄ππΆπ | AllTheBact'23 βπ³π±ππΆπ] bioinformatics compression indexing bacteria genomes phylogeny assemblies mof k-mers phylogenetic-compression prophyle Updated Apr 1, 2025 Python
prophyle / prophasm Star 26 Code Issues Pull requests ProphAsm β a rapid computation of simplitigs directly from k-mer sets de-bruijn-graphs k-mers simplitigs prophyle Updated Feb 17, 2023 C++
prophyle / prophex Star 6 Code Issues Pull requests ProPhex β an exact k-mer index using Burrows-Wheeler Transform index bwt burrows-wheeler-transform k-mers prophyle kmer-indexing Updated Oct 2, 2023 C