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@@ -1,2 +1,2 @@
 >seq1
-CAAAAGAGTGACTTTGTAAAAACA
+CACATGAATACGATCGATCGATCAAAAGAGTGACTTTGTAAAAACA
@@ -1,5 +1,5 @@
 @seq1
-CAAAAGAGTGACTTTGTAAAAACA
+CACATGAATACGATCGATCGATCAAAAGAGTGACTTTGTAAAAACA
 +
 !!!!!!!!!!!!!!!!!!!!!!!!
 @seq2 - creates inward edges
@@ -14,3 +14,7 @@ AAAAGAGTGACTTTGTAAAAAT
 CAAAGAGTGACTTTGTAAAAAT
 +
 !!!!!!!!!!!!!!!!!!!!!!
+@seq5 - alt allele
+CACATGAATACGATCGATCGAcCAAAAGAGTGACTTTGTAAAAACA
++
+!!!!!!!!!!!!!!!!!!!!!!!!
Original file line number	Diff line number	Diff line change
`@@ -1,2 +1,2 @@`
`1`	`1`	`>seq1`
`2`		`-CAAAAGAGTGACTTTGTAAAAACA`
	`2`	`+CACATGAATACGATCGATCGATCAAAAGAGTGACTTTGTAAAAACA`
Original file line number	Diff line number	Diff line change
`@@ -1,5 +1,5 @@`
`1`	`1`	`@seq1`
`2`		`-CAAAAGAGTGACTTTGTAAAAACA`
	`2`	`+CACATGAATACGATCGATCGATCAAAAGAGTGACTTTGTAAAAACA`
`3`	`3`	`+`
`4`	`4`	`!!!!!!!!!!!!!!!!!!!!!!!!`
`5`	`5`	`@seq2 - creates inward edges`
`@@ -14,3 +14,7 @@ AAAAGAGTGACTTTGTAAAAAT`
`14`	`14`	`CAAAGAGTGACTTTGTAAAAAT`
`15`	`15`	`+`
`16`	`16`	`!!!!!!!!!!!!!!!!!!!!!!`
	`17`	`+@seq5 - alt allele`
	`18`	`+CACATGAATACGATCGATCGAcCAAAAGAGTGACTTTGTAAAAACA`
	`19`	`++`
	`20`	`+!!!!!!!!!!!!!!!!!!!!!!!!`