GeneSeqX is a comprehensive bioinformatics framework designed for the storage, processing, analysis, and visualization of gene sequence data. This framework provides a robust set of features to facilitate data management, sequence analysis, and visualization, making it an essential tool for researchers and bioinformaticians.
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Data Management:
- Efficient storage and retrieval of gene sequence data.
- Support for various data formats including FASTA, FASTQ, BAM, and VCF.
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Sequence Analysis:
- Advanced algorithms for sequence alignment (e.g., BLAST, Bowtie).
- Phylogenetic tree construction from sequence data.
- Statistical analysis functions for calculating SNPs and INDELs.
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Visualization:
- Interactive tools for visualizing gene sequences and analysis results.
- Utility functions for generating plots and visual representations of data.
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Computational Support:
- Workflow orchestration for executing analysis and visualization tasks.
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Data Integration:
- Communication with external databases and services.
- Functions for converting between different data formats and structures.
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User Permissions and Security:
- User management and authentication.
- Permission management to control access to specific features based on user roles.