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quantms added #350

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merged 5 commits into from
Oct 31, 2024
Merged

quantms added #350

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3b95521
quantms added
ypriverol Oct 30, 2024
9f51a62
version increased.
ypriverol Oct 30, 2024
7cef8e2
version increased.
ypriverol Oct 30, 2024
5dd9834
version increased.
ypriverol Oct 30, 2024
ddb44b2
quantms changed
ypriverol Oct 30, 2024
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4 changes: 2 additions & 2 deletions .github/workflows/validate-owl.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -43,8 +43,8 @@ jobs:
- name: Validate OWL File for OLS
run: |
cd ols4/dataload/rdf2json/target
wget https://raw.githubusercontent.com/ypriverol/psi-ms-CV/dev/owl-config-ols/foundry.json
wget https://raw.githubusercontent.com/ypriverol/psi-ms-CV/dev/owl-config-ols/fail_owl.json
wget https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/owl-config-ols/foundry.json
wget https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/owl-config-ols/fail_owl.json
java -jar rdf2json-1.0-SNAPSHOT.jar --config foundry.json --output foundry_out.json
if diff foundry_out.json fail_owl.json > /dev/null; then
echo "The PSI-MS ontology has an error in the owl file and do not allow to import in OLS"
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13 changes: 10 additions & 3 deletions psi-ms.obo
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@@ -1,7 +1,7 @@
format-version: 1.2
data-version: 4.1.182
date: 11:10:2024 07:15
saved-by: Joshua Klein
data-version: 4.1.183
date: 30:10:2024 10:15
saved-by: Yasset Perez-Riverol
auto-generated-by: OBO-Edit 2.3.1
default-namespace: MS
namespace-id-rule: * MS:$sequence(7,0,9999999)$
Expand Down Expand Up @@ -22667,6 +22667,13 @@ name: selected fragment theoretical m/z observed intensity spectrum
def: "Spectrum for which the peaks are limited to a subset of known product ions that are important for subsequent identification, whose m/z values are corrected to theoretical values, and intensity values are experimentally derived." [PSI:PI]
is_a: MS:1003072 ! spectrum origin type

[Term]
id: MS:1003425
name: quantms
def: "Is a cloud-based pipeline for quantitative proteomics enables the reanalysis of public proteomics data" [PSI:MS]
is_a: MS:1001456 ! analysis software
is_a: MS:1001139 ! quantitation software name

[Term]
id: MS:4000000
name: PSI-MS CV Quality Control Vocabulary
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