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CenGEN

The Complete Gene Expression Map of the C. elegans Nervous System

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  1. CengenApp CengenApp Public

    R 4 1

  2. Thresholding_sc Thresholding_sc Public

    Selecting a threshold for calling gene expression in single-cell data

    R 1

  3. connectivity_analysis connectivity_analysis Public

    Hypothesis testing the genetic basis of the connectome

    MATLAB

  4. Initial_single_cell_analysis Initial_single_cell_analysis Public

    Cell calling and background correction on individual single-cell experiments

    R

  5. splicing splicing Public

    Splicing analysis with SplAdder

    R

  6. bulk_align bulk_align Public

    Alignment pipeline

    Nextflow

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  • CeNGEN_integrated_analysis_2024 Public

    Github repo for the 2024 CeNGEN manuscript detailing our work analyzing gene expression data from FACS sorted C. elegans neurons, integrating data from both bulk and single cell RNA-seq methods

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    R 0 MIT 0 0 0 Updated Mar 5, 2025
  • regression_exon_skipping Public
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    R 0 GPL-3.0 0 0 0 Updated Feb 13, 2025
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    R 0 GPL-3.0 0 0 0 Updated Feb 6, 2025
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    HTML 0 GPL-3.0 0 0 0 Updated Jan 23, 2025
  • CengenApp Public
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    R 4 1 2 0 Updated Jan 7, 2025
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    HTML 0 GPL-3.0 0 0 0 Updated Nov 7, 2024
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    R 0 GPL-3.0 0 0 0 Updated Nov 7, 2024
  • das_by_neuron Public
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    R 0 GPL-3.0 0 0 0 Updated Nov 7, 2024
  • splicing_browser Public
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    R 0 GPL-3.0 0 0 0 Updated Nov 7, 2024
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