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openproblems-bio / task_label_projection Public

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Test

Add scGPT: Zero-shot application #20

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Add scGPT: Zero-shot application

Add scGPT: Zero-shot application #20

Summary
Jobs
- List components to test
  
  Test (majority_vote, control_methods, src/control_methods/majority_vote/config.vsh.yaml, src/cont...
  
  Test (true_labels, control_methods, src/control_methods/true_labels/config.vsh.yaml, src/control_...
  
  Test (random_labels, control_methods, src/control_methods/random_labels/config.vsh.yaml, src/cont...
  
  Test (accuracy, metrics, src/metrics/accuracy/config.vsh.yaml, src/metrics/accuracy/, python_scri...
  
  Test (f1, metrics, src/metrics/f1/config.vsh.yaml, src/metrics/f1/, python_script, metrics/f1)
  
  Test (process_dataset, data_processors, src/data_processors/process_dataset/config.vsh.yaml, src/...
  
  Test (scanvi, methods, src/methods/scanvi/config.vsh.yaml, src/methods/scanvi/, python_script, me...
  
  Test (scgpt_zero_shot, methods, src/methods/scgpt_zero_shot/config.vsh.yaml, src/methods/scgpt_ze...
  
  Test (logistic_regression, methods, src/methods/logistic_regression/config.vsh.yaml, src/methods/...
  
  Test (mlp, methods, src/methods/mlp/config.vsh.yaml, src/methods/mlp/, python_script, methods/mlp)
  
  Test (singler, methods, src/methods/singler/config.vsh.yaml, src/methods/singler/, r_script, meth...
  
  Test (xgboost, methods, src/methods/xgboost/config.vsh.yaml, src/methods/xgboost/, python_script,...
  
  Test (naive_bayes, methods, src/methods/naive_bayes/config.vsh.yaml, src/methods/naive_bayes/, py...
  
  Test (scanvi_scarches, methods, src/methods/scanvi_scarches/config.vsh.yaml, src/methods/scanvi_s...
  
  Test (seurat_transferdata, methods, src/methods/seurat_transferdata/config.vsh.yaml, src/methods/...
  
  Test (knn, methods, src/methods/knn/config.vsh.yaml, src/methods/knn/, python_script, methods/knn)
Run details
- Usage
- Workflow file

Usage Workflow file

Annotations

1 warning

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

test / Test (majority_vote, control_methods, src/control_methods/majority_vote/config.vsh.yaml, src/cont...

succeeded Dec 11, 2024 in 1m 41s

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